# TARGET T0231 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0231.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 173.519 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.024 0.014 0.005 0.005 0.192 0.761 2 S 0.063 0.040 0.007 0.008 0.214 0.668 3 D 0.049 0.022 0.014 0.006 0.405 0.503 4 S 0.083 0.014 0.025 0.009 0.509 0.360 5 L 0.202 0.011 0.024 0.013 0.352 0.398 6 V 0.345 0.014 0.024 0.022 0.266 0.329 7 V 0.646 0.020 0.021 0.021 0.109 0.182 8 C 0.787 0.032 0.016 0.024 0.056 0.085 9 E 0.678 0.028 0.016 0.017 0.088 0.173 10 V 0.218 0.020 0.006 0.017 0.174 0.565 11 D 0.024 0.003 0.002 0.014 0.177 0.780 12 P 0.001 0.001 0.053 0.897 0.038 0.011 13 E 0.001 0.001 0.048 0.925 0.022 0.004 14 L 0.001 0.001 0.021 0.966 0.009 0.002 15 K 0.001 0.001 0.003 0.988 0.003 0.004 16 E 0.001 0.001 0.003 0.990 0.003 0.002 17 T 0.001 0.001 0.004 0.988 0.005 0.003 18 L 0.001 0.001 0.004 0.980 0.009 0.005 19 R 0.002 0.001 0.007 0.970 0.014 0.007 20 K 0.003 0.001 0.011 0.931 0.027 0.027 21 F 0.012 0.003 0.014 0.734 0.070 0.167 22 R 0.050 0.010 0.022 0.326 0.223 0.369 23 F 0.081 0.014 0.030 0.214 0.314 0.347 24 R 0.078 0.012 0.035 0.122 0.450 0.303 25 K 0.086 0.014 0.062 0.094 0.473 0.270 26 E 0.115 0.018 0.078 0.039 0.522 0.228 27 T 0.110 0.010 0.103 0.024 0.613 0.141 28 N 0.179 0.016 0.049 0.008 0.439 0.309 29 N 0.344 0.015 0.012 0.001 0.331 0.297 30 A 0.545 0.003 0.002 0.001 0.138 0.312 31 A 0.968 0.001 0.001 0.001 0.005 0.025 32 I 0.997 0.001 0.001 0.001 0.001 0.002 33 I 0.999 0.001 0.001 0.001 0.001 0.001 34 M 0.998 0.001 0.001 0.001 0.001 0.002 35 K 0.993 0.001 0.001 0.001 0.001 0.006 36 V 0.970 0.001 0.001 0.001 0.003 0.026 37 D 0.718 0.008 0.001 0.001 0.248 0.025 38 K 0.032 0.001 0.034 0.003 0.921 0.009 39 D 0.007 0.001 0.042 0.002 0.941 0.008 40 R 0.032 0.004 0.014 0.001 0.938 0.012 41 Q 0.249 0.004 0.001 0.001 0.186 0.560 42 M 0.949 0.009 0.001 0.001 0.006 0.037 43 V 0.987 0.001 0.001 0.001 0.002 0.009 44 V 0.989 0.001 0.001 0.001 0.001 0.009 45 L 0.933 0.001 0.001 0.001 0.008 0.056 46 E 0.726 0.003 0.004 0.005 0.072 0.191 47 D 0.429 0.005 0.022 0.015 0.237 0.293 48 E 0.162 0.018 0.048 0.061 0.416 0.295 49 L 0.134 0.026 0.046 0.055 0.587 0.152 50 Q 0.152 0.018 0.034 0.041 0.494 0.261 51 N 0.069 0.016 0.020 0.024 0.521 0.350 52 I 0.061 0.045 0.005 0.010 0.360 0.518 53 S 0.023 0.018 0.001 0.006 0.066 0.885 54 P 0.001 0.001 0.184 0.793 0.014 0.008 55 E 0.001 0.001 0.171 0.816 0.010 0.002 56 E 0.001 0.001 0.111 0.880 0.007 0.001 57 L 0.001 0.001 0.020 0.968 0.006 0.004 58 K 0.002 0.001 0.040 0.935 0.016 0.007 59 L 0.002 0.001 0.041 0.912 0.028 0.016 60 E 0.004 0.004 0.060 0.696 0.085 0.151 61 L 0.005 0.021 0.016 0.034 0.300 0.624 62 P 0.002 0.004 0.030 0.011 0.870 0.083 63 E 0.002 0.003 0.058 0.009 0.882 0.047 64 R 0.002 0.003 0.059 0.009 0.882 0.046 65 Q 0.023 0.019 0.022 0.002 0.809 0.126 66 P 0.079 0.008 0.012 0.002 0.254 0.644 67 R 0.587 0.020 0.006 0.001 0.129 0.257 68 F 0.980 0.002 0.001 0.001 0.006 0.012 69 V 0.996 0.001 0.001 0.001 0.001 0.002 70 V 0.998 0.001 0.001 0.001 0.001 0.002 71 Y 0.988 0.001 0.001 0.001 0.002 0.010 72 S 0.942 0.001 0.001 0.001 0.017 0.039 73 Y 0.747 0.002 0.002 0.002 0.093 0.154 74 K 0.624 0.004 0.007 0.004 0.204 0.157 75 Y 0.829 0.007 0.005 0.005 0.095 0.059 76 V 0.777 0.022 0.003 0.005 0.059 0.134 77 H 0.535 0.031 0.003 0.007 0.364 0.060 78 D 0.064 0.004 0.015 0.011 0.865 0.040 79 D 0.014 0.001 0.015 0.013 0.928 0.029 80 G 0.042 0.008 0.013 0.008 0.899 0.031 81 R 0.427 0.031 0.007 0.009 0.300 0.226 82 V 0.719 0.035 0.007 0.010 0.088 0.141 83 S 0.722 0.032 0.005 0.006 0.081 0.154 84 Y 0.464 0.004 0.004 0.002 0.174 0.353 85 P 0.437 0.001 0.003 0.001 0.197 0.361 86 L 0.923 0.003 0.001 0.001 0.022 0.051 87 C 0.990 0.001 0.001 0.001 0.003 0.006 88 F 0.998 0.001 0.001 0.001 0.001 0.001 89 I 0.995 0.001 0.001 0.001 0.001 0.003 90 F 0.975 0.001 0.001 0.001 0.005 0.018 91 S 0.841 0.003 0.001 0.001 0.029 0.126 92 S 0.214 0.013 0.003 0.001 0.167 0.601 93 P 0.031 0.011 0.022 0.003 0.881 0.052 94 V 0.007 0.005 0.051 0.003 0.902 0.032 95 G 0.002 0.002 0.032 0.003 0.911 0.051 96 C 0.017 0.047 0.005 0.004 0.718 0.209 97 K 0.010 0.020 0.001 0.008 0.097 0.864 98 P 0.001 0.003 0.044 0.882 0.040 0.030 99 E 0.001 0.001 0.043 0.933 0.020 0.004 100 Q 0.002 0.001 0.051 0.922 0.020 0.004 101 Q 0.006 0.001 0.021 0.928 0.029 0.015 102 M 0.011 0.003 0.020 0.901 0.038 0.028 103 M 0.015 0.004 0.021 0.906 0.027 0.027 104 Y 0.025 0.005 0.036 0.818 0.054 0.061 105 A 0.015 0.004 0.076 0.720 0.095 0.090 106 G 0.016 0.008 0.065 0.624 0.125 0.162 107 S 0.006 0.006 0.029 0.582 0.073 0.305 108 K 0.001 0.001 0.012 0.977 0.005 0.006 109 N 0.001 0.001 0.009 0.985 0.004 0.002 110 R 0.001 0.001 0.010 0.981 0.006 0.002 111 L 0.001 0.001 0.009 0.979 0.008 0.003 112 V 0.002 0.001 0.015 0.954 0.021 0.007 113 Q 0.006 0.001 0.025 0.916 0.029 0.024 114 T 0.018 0.002 0.019 0.878 0.036 0.047 115 A 0.042 0.008 0.020 0.430 0.098 0.402 116 E 0.026 0.002 0.002 0.002 0.067 0.900 117 L 0.224 0.005 0.003 0.002 0.117 0.649 118 T 0.392 0.001 0.002 0.001 0.073 0.531 119 K 0.889 0.002 0.001 0.001 0.022 0.085 120 V 0.970 0.001 0.001 0.001 0.006 0.022 121 F 0.981 0.001 0.001 0.001 0.003 0.014 122 E 0.955 0.002 0.001 0.001 0.012 0.029 123 I 0.634 0.008 0.001 0.002 0.081 0.274 124 R 0.176 0.011 0.005 0.002 0.320 0.486 125 T 0.039 0.012 0.023 0.004 0.537 0.385 126 T 0.002 0.001 0.800 0.016 0.164 0.018 127 D 0.004 0.001 0.778 0.017 0.182 0.018 128 D 0.005 0.003 0.843 0.019 0.120 0.011 129 L 0.034 0.056 0.052 0.068 0.369 0.422 130 T 0.031 0.018 0.008 0.091 0.149 0.703 131 E 0.001 0.001 0.006 0.986 0.004 0.003 132 T 0.001 0.001 0.005 0.991 0.002 0.001 133 W 0.001 0.001 0.006 0.989 0.003 0.001 134 L 0.001 0.001 0.003 0.990 0.002 0.003 135 K 0.001 0.001 0.002 0.994 0.002 0.001 136 E 0.001 0.001 0.004 0.986 0.006 0.003 137 K 0.001 0.001 0.004 0.975 0.011 0.010 138 L 0.001 0.001 0.010 0.953 0.019 0.015 139 A 0.002 0.001 0.041 0.833 0.064 0.059 140 F 0.002 0.001 0.053 0.601 0.106 0.237 141 F 0.006 0.006 0.026 0.177 0.156 0.630 142 R 0.016 0.008 0.006 0.037 0.120 0.812