# TARGET T0230 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0230.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 48.2413 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.008 0.003 0.002 0.005 0.072 0.911 2 P 0.020 0.010 0.008 0.028 0.149 0.785 3 M 0.014 0.012 0.037 0.101 0.237 0.598 4 S 0.022 0.018 0.056 0.158 0.293 0.453 5 K 0.033 0.006 0.057 0.251 0.229 0.425 6 K 0.059 0.008 0.043 0.333 0.175 0.382 7 V 0.069 0.027 0.016 0.350 0.154 0.384 8 T 0.047 0.013 0.005 0.333 0.051 0.551 9 K 0.001 0.001 0.003 0.992 0.001 0.003 10 E 0.001 0.001 0.004 0.991 0.002 0.002 11 D 0.001 0.001 0.002 0.994 0.002 0.002 12 V 0.001 0.001 0.001 0.997 0.001 0.001 13 L 0.001 0.001 0.001 0.998 0.001 0.001 14 N 0.001 0.001 0.002 0.994 0.002 0.001 15 A 0.001 0.001 0.002 0.991 0.003 0.003 16 L 0.001 0.001 0.004 0.983 0.009 0.003 17 K 0.001 0.001 0.012 0.944 0.030 0.011 18 N 0.003 0.001 0.023 0.812 0.110 0.051 19 V 0.009 0.017 0.016 0.674 0.250 0.033 20 I 0.016 0.026 0.010 0.624 0.195 0.129 21 D 0.007 0.012 0.009 0.130 0.569 0.272 22 F 0.002 0.001 0.184 0.145 0.572 0.095 23 E 0.009 0.008 0.331 0.121 0.453 0.078 24 L 0.014 0.015 0.314 0.158 0.406 0.092 25 G 0.024 0.018 0.029 0.085 0.290 0.553 26 L 0.067 0.009 0.004 0.022 0.217 0.681 27 D 0.249 0.010 0.008 0.023 0.184 0.526 28 V 0.797 0.018 0.015 0.016 0.060 0.093 29 V 0.949 0.004 0.009 0.008 0.011 0.018 30 S 0.941 0.002 0.013 0.016 0.012 0.016 31 L 0.786 0.003 0.022 0.018 0.046 0.125 32 G 0.465 0.002 0.018 0.002 0.109 0.404 33 L 0.792 0.007 0.009 0.001 0.050 0.141 34 V 0.885 0.003 0.010 0.001 0.030 0.070 35 Y 0.930 0.001 0.004 0.001 0.025 0.039 36 D 0.940 0.001 0.002 0.002 0.021 0.034 37 I 0.968 0.002 0.001 0.002 0.009 0.019 38 Q 0.990 0.001 0.001 0.001 0.003 0.006 39 I 0.973 0.006 0.001 0.001 0.006 0.014 40 D 0.633 0.005 0.002 0.001 0.350 0.010 41 D 0.094 0.002 0.037 0.003 0.848 0.017 42 Q 0.018 0.001 0.046 0.002 0.916 0.017 43 N 0.168 0.015 0.014 0.001 0.756 0.047 44 N 0.233 0.003 0.001 0.001 0.047 0.717 45 V 0.917 0.008 0.001 0.001 0.008 0.067 46 K 0.963 0.001 0.001 0.001 0.006 0.030 47 V 0.980 0.001 0.001 0.001 0.002 0.017 48 L 0.985 0.001 0.001 0.001 0.002 0.012 49 M 0.965 0.002 0.001 0.001 0.004 0.029 50 T 0.859 0.008 0.001 0.001 0.049 0.083 51 M 0.300 0.019 0.002 0.003 0.296 0.380 52 T 0.051 0.012 0.005 0.007 0.590 0.335 53 T 0.019 0.016 0.012 0.018 0.730 0.205 54 P 0.013 0.018 0.046 0.161 0.526 0.236 55 M 0.021 0.052 0.096 0.212 0.396 0.224 56 C 0.013 0.023 0.106 0.308 0.388 0.163 57 P 0.005 0.010 0.130 0.522 0.218 0.115 58 L 0.003 0.004 0.155 0.654 0.130 0.054 59 A 0.004 0.002 0.134 0.728 0.096 0.036 60 G 0.003 0.001 0.133 0.743 0.091 0.030 61 M 0.004 0.003 0.101 0.832 0.044 0.016 62 I 0.002 0.001 0.029 0.927 0.024 0.016 63 L 0.001 0.001 0.017 0.951 0.014 0.016 64 S 0.001 0.001 0.017 0.953 0.017 0.012 65 D 0.002 0.001 0.011 0.957 0.013 0.016 66 A 0.001 0.001 0.003 0.985 0.004 0.007 67 E 0.001 0.001 0.003 0.992 0.002 0.002 68 E 0.001 0.001 0.004 0.989 0.004 0.002 69 A 0.001 0.001 0.005 0.985 0.005 0.005 70 I 0.001 0.001 0.008 0.981 0.007 0.004 71 K 0.002 0.001 0.018 0.944 0.020 0.015 72 K 0.003 0.001 0.030 0.774 0.060 0.133 73 I 0.012 0.014 0.050 0.280 0.546 0.098 74 E 0.019 0.007 0.045 0.074 0.711 0.143 75 G 0.021 0.003 0.032 0.008 0.733 0.204 76 V 0.156 0.022 0.048 0.003 0.707 0.064 77 N 0.459 0.014 0.027 0.003 0.278 0.220 78 N 0.683 0.006 0.021 0.002 0.172 0.116 79 V 0.925 0.003 0.001 0.001 0.033 0.038 80 E 0.970 0.001 0.001 0.001 0.005 0.025 81 V 0.990 0.001 0.001 0.001 0.002 0.007 82 E 0.989 0.001 0.001 0.001 0.002 0.008 83 L 0.979 0.001 0.001 0.001 0.003 0.016 84 T 0.925 0.003 0.001 0.001 0.021 0.050 85 F 0.625 0.018 0.001 0.001 0.087 0.268 86 D 0.194 0.012 0.005 0.001 0.359 0.429 87 P 0.053 0.018 0.013 0.002 0.555 0.359 88 P 0.026 0.018 0.030 0.007 0.636 0.283 89 W 0.024 0.041 0.035 0.019 0.597 0.284 90 T 0.013 0.019 0.044 0.048 0.650 0.226 91 P 0.002 0.003 0.640 0.123 0.197 0.035 92 E 0.003 0.003 0.713 0.108 0.154 0.018 93 R 0.004 0.006 0.661 0.088 0.209 0.031 94 M 0.009 0.034 0.073 0.223 0.295 0.366 95 S 0.007 0.018 0.006 0.226 0.120 0.624 96 P 0.001 0.001 0.006 0.990 0.002 0.001 97 E 0.001 0.001 0.007 0.988 0.004 0.001 98 L 0.001 0.001 0.009 0.986 0.004 0.001 99 R 0.001 0.001 0.003 0.993 0.003 0.001 100 E 0.001 0.001 0.005 0.989 0.003 0.002 101 K 0.001 0.001 0.004 0.981 0.005 0.009 102 F 0.001 0.001 0.003 0.931 0.007 0.058 103 G 0.001 0.001 0.001 0.018 0.012 0.967 104 V 0.002 0.001 0.001 0.001 0.010 0.986