# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qk8A 146 3.27e-03 1ewxA c.47.1.10 33061 1o8xA 146 6.29e-03 c.47.1.10 86681 1i5gA 144 1.04e-02 1ewxA c.47.1.10 61784 1v58A 241 1.78e-02 1v6fA 151 3.65e-02 1osdA 72 1.17e-01 1lu4A 136 1.63e-01 c.47.1.10 -7509 1bed 181 1.84e-01 1fvkA unknown_sccs -7444 1r26A 125 4.54e-01 c.47.1.1 -7389 2acy 98 7.66e-01 2acy d.58.10.1 39298 1josA 128 8.29e-01 d.52.7.1 84191 1rro 108 9.50e-01 1a75A a.39.1.4 17195 1cl8A 276 1.05e+00 1ckqA c.52.1.1 33230 1uc2A 481 1.20e+00 unknown_sccs -11725 1fp3A 402 1.29e+00 1fp3A a.102.1.3 18842 1hd2A 161 1.42e+00 c.47.1.10 60962 1f7sA 139 1.73e+00 1cof d.109.1.2 40857 1eejA 216 1.73e+00 1eejA c.47.1.9 33057 d.17.3.1 38071 1ceo 343 1.75e+00 1ceo c.1.8.3 28808 1a8l 226 1.80e+00 1a8l c.47.1.2 32777 c.47.1.2 32778 1erv 105 2.00e+00 1erv c.47.1.1 32743 1ctn 540 2.06e+00 1ctn b.1.18.2 21876 c.1.8.5 29005 d.26.3.1 38439 1lxiA 139 2.18e+00 g.17.1.2 84735 1mo9A 523 2.90e+00 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1fcdA 401 3.54e+00 1fcdA c.3.1.5 30593 c.3.1.5 30594 d.87.1.1 40218 1fb6A 105 3.56e+00 1thx c.47.1.1 32739 1l3iA 192 3.67e+00 c.66.1.22 77676 1edqA 540 3.71e+00 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1mfmA 153 4.30e+00 1mfmA b.1.8.1 22246 1aiu 105 4.77e+00 1erv c.47.1.1 32746 1qlaB 239 5.00e+00 1qlaB a.1.2.1 15679 d.15.4.2 37707 1e0bA 68 5.31e+00 1e0bA b.34.13.2 37476 1j08A 226 5.73e+00 c.47.1.2 83855 c.47.1.2 83856 1jyoA 130 6.42e+00 d.198.1.1 67483 1iloA 77 6.81e+00 c.47.1.1 66205 1dkuA 317 7.11e+00 1dkuA c.61.1.2 34118 c.61.1.2 34119 3rubS 123 7.14e+00 1rboC d.73.1.1 39616 1faaA 124 7.20e+00 1erv c.47.1.1 32738 1f9mA 112 7.21e+00 1erv c.47.1.1 32736 1jfuA 186 7.28e+00 c.47.1.10 62940 1nw2A 105 7.76e+00 c.47.1.1 -7380 1ii7A 333 7.88e+00 1ii7A d.159.1.4 62415 1qpcA 279 8.03e+00 1fgkA d.144.1.7 41685 1iupA 282 8.60e+00 c.69.1.10 76815 1fsz 372 9.26e+00 1fsz c.32.1.1 31750 d.79.2.1 39802 1sdjA 310 9.40e+00 d.21.1.2 -9420 d.21.1.2 -9421 1acvA 189 1.03e+01 1fvkA unknown_sccs -7428 1em2A 229 1.10e+01 1em2A d.129.3.2 41321 1e8gA 560 1.13e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 1fvgA 199 1.16e+01 1fvaA d.58.28.1 39408 1ca1 370 1.17e+01 1ca1 a.124.1.1 19340 b.12.1.3 23648 1dmhA 311 1.17e+01 1dmhA b.3.6.1 22633 1h8mA 140 1.21e+01 1h8mA d.110.4.1 60782 1iyrA 111 1.21e+01 a.164.1.1 76973 1n82A 331 1.22e+01 c.1.8.3 -5306 1eemA 241 1.26e+01 1eemA a.45.1.1 17717 c.47.1.5 33011 1k3sA 113 1.27e+01 d.198.1.1 68120 1q48A 134 1.28e+01 unknown_sccs -9776 1dozA 309 1.33e+01 1ak1 c.92.1.1 35592 1f46A 140 1.37e+01 1f46A d.129.4.1 59643 1sxjE 354 1.37e+01 1thx 115 1.39e+01 1thx c.47.1.1 32732 1fvkA 189 1.40e+01 1fvkA unknown_sccs -7419 1kid 203 1.49e+01 1derA c.8.5.1 30771 1tx4B 178 1.51e+01 1ctqA c.37.1.8 32045 1j5pA 253 1.57e+01 c.2.1.3 83092 d.81.1.3 71577 1gnlA 544 1.58e+01 e.26.1.1 70287 1rewA 114 1.61e+01 g.17.1.2 -12600 1eudB 396 1.64e+01 2scuB c.23.4.1 31150 d.142.1.4 41571 1qysA 106 1.66e+01 unknown_sccs -13432 1a7tA 232 1.67e+01 1a7tA d.157.1.1 42041 1ef8A 261 1.68e+01 1ef8A c.14.1.3 30921 1no4A 97 1.71e+01 h.1.24.1 85918 1gudA 288 1.72e+01 c.93.1.1 83326 1bn7A 294 1.76e+01 1bn6A c.69.1.8 34677 7a3hA 303 1.80e+01 7a3hA c.1.8.3 28817 1d1qA 161 1.80e+01 1dg9A c.44.1.1 32642 1psuA 140 1.83e+01 d.38.1.5 88285 1v0wA 506 1.83e+01 2trxA 108 1.89e+01 1thx c.47.1.1 32719 1b6a 478 1.90e+01 1bn5 a.4.5.25 16223 d.127.1.1 41160 1ci3M 249 1.95e+01 1hcz b.2.6.1 22480 b.84.2.2 28266 1q08A 99 1.97e+01 a.6.1.3 -381 1t95A 240 2.01e+01 1b8aA 438 2.10e+01 1b8aA b.40.4.1 25244 d.104.1.1 40765 1dg9A 157 2.19e+01 1dg9A c.44.1.1 32637 1dvoA 152 2.25e+01 1dvoA a.136.1.1 19623 1p9qC 256 2.28e+01 1gegA 256 2.31e+01 1ybvA c.2.1.2 29888 1gt6A 269 2.37e+01 c.69.1.17 76342 1e6pA 499 2.38e+01 1e15A b.72.2.1 59314 c.1.8.5 59315 d.26.3.1 59316 1burS 123 2.46e+01 1rboC 1grx 85 2.52e+01 1kte c.47.1.1 32766 1id0A 152 2.53e+01 d.122.1.3 66111 1i1qB 192 2.56e+01 1qdlB c.23.16.1 61544 1c0eA 157 2.58e+01 1dg9A c.44.1.1 32638 1ccwB 483 2.73e+01 1cb7B c.1.19.2 29646 1tib 269 2.76e+01 3tgl c.69.1.17 34738 1r53A 382 2.85e+01 unknown_sccs -11177 1mwpA 96 2.87e+01 1mwpA d.170.2.1 42453 1fjnA 39 2.87e+01 1fjnA g.3.7.3 44171 1ew4A 106 2.97e+01 1ew4A d.82.2.1 40023 1kmqA 184 2.98e+01 c.37.1.8 84412 1ir6A 424 3.03e+01 c.107.1.2 71342 1mkaA 171 3.11e+01 1mkaA d.38.1.2 38543 1nbuA 119 3.15e+01 d.96.1.3 -10699 1nxuA 333 3.16e+01 c.122.1.1 86389 1urrA 102 3.23e+01 1ua4A 455 3.29e+01 c.72.1.3 -8416 1f0iA 504 3.32e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1dfoA 417 3.40e+01 1bj4A c.67.1.4 34480 1erd 40 3.52e+01 1erd a.10.1.1 16362 1oz9A 150 3.60e+01 unknown_sccs -10588 1kl1A 419 3.66e+01 c.67.1.4 72663 1i88A 389 3.72e+01 c.95.1.2 66070 c.95.1.2 66071 1qmhA 347 3.72e+01 1qmhA c.47.2.1 33082 d.68.2.1 39568 1dpe 507 3.74e+01 1dpe c.94.1.1 35799 1vjhA 122 3.81e+01 d.129.3.1 -11037 1oapA 109 3.89e+01 unknown_sccs -10428 1rgxA 114 3.90e+01 1k87A 669 3.92e+01 a.176.1.1 77286 c.1.23.2 77287 1ng4A 390 3.96e+01 c.3.1.2 85666 d.16.1.3 85667 1d8wA 426 3.97e+01 1de5A c.1.15.2 29394 1st9A 143 3.98e+01 c.47.1.10 -7503