Best Alignments for T0224

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jx7A/T0224-1jx7A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1jx7A/T0224-1jx7A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 7.3445e-011.2792e-01 c.114.1.1
1cn4A/1eerB-T0224-fssp-local-adpstyle5.a2m 1cn4A/1eerB-T0224-fssp-local-adpstyle5.al 1.1447e+006.8573e-01 1eerB b.1.2.1
1ndk/T0224-1ndk-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1ndk/T0224-1ndk-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.9379e+003.7797e+00 1npk d.58.6.1
2frvA/T0224-2frvA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 2frvA/T0224-2frvA-t2k-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 9.2829e+002.1922e+00 2frvA e.19.1.1
1m32A/T0224-1m32A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1m32A/T0224-1m32A-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.4529e+013.3914e+00 c.67.1.3
1d7yA/T0224-1d7yA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1d7yA/T0224-1d7yA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 1.9009e+012.9936e+00 1d7yA c.3.1.5
d.87.1.1
1l1qA/T0224-1l1qA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1l1qA/T0224-1l1qA-t04-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.2049e+012.8415e+00 c.61.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001