(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0224 TM0979, Thermotoga maritima
              10        20        30        40             50        60
              |         |         |         |              |         |
   1 MALVLVKYGTDHPVEKLKIRSAKAEDKIVLIQNGVFWALEELET.....PAKVYAIKDDFLARGY
   2 MLHTVTTSPFHTQSLQSCLRYISQDDEILLLQDAVFAGLRENIWsk7isGVKIYLLKEDLLARGI
   3 MALVLVKYGTDHPVEKLKIRSAKAEDKIVLIQNGVFWALEELET.....PAKVYAIKDDFLARGY
   4 MLHTLMKSPFETNV-SLVISMLKKSDDFLALQDGVLIALKDNIFlk7msPVKLYLIKEDVYARGI
   5 MLYTVSHSPYHCDL-SALLRLATSEDDILLLQDGVIAALKESETlk7nnPASLFVLEDDVIARGL
   6 MLHTLMKSPFETNI-SFFSGMLKKTDDFLALQDGVLIALIDNIFlk7fsSENLYVIKEDVYARGI
   7 MLHTLHRSPWLTDF-AALLRLLSEGDELLLLQDGVTAAVDGNRYle7naPIKVYALNEDLIARGL
   8 MLHTLHRSPWLTDF-AALLRLLSEGDELLLLQDGVTAAVDGNRYle7naPIKVYALNEDLIARGL
   9 MLHTLHRSPWLTDF-AALLRLLSEGDELLLLQDGVTAAVDGNRYle7naPIKVYALNEDLIARGL
  10 MLHTLHRSPWLTDF-AALLRLLSEGDELLLLQDGVTAAVDGNRYle7naPIKVYALNEDLIARGL
  11 ILHHIQTSPSRDNALKLCLRYACKEDAILLSSDGVNALLLRQWAmals.PFKVMVLKDDVVARGL
  12 MLHTLPHCASSVDF-PALLRLLKEGDALLLLQDGVTVAIEGNRFle7daPITVYALKEDIDARGL
  13 MLHTLPHCASGVDF-PALLRLLKEGDALLLLQDGVTVAIEGNRFle7daPITVYALKEDIDARGL
  14 MALIIVKKSPSEKISEFLLNLALPQDKVLFVQDGVIFAACKNVKnlvkeGVELFALKEDFIARGF
  15 MLYTFAEASYPEGVLLTYLQQTTSQDAIVLWQDGVYLCVKYPEVfssl.NTSCYALDIDVGARNL
  16 MLYTFSQSDYPKTELDDYFSYITEKDAVVLWQDGVLLAIKYPDYfakc.KGNCMILKQDILARNL
  17 MLYTVGRSPYQCDF-NVISKLLARGDDILFIQDGVLAGIEGNCYls7scGAALYALKEDIEARGL
  18 MLYTFSKANYSLDDLQIILTHITKQDIIVLWQDGVLLAVKYPFLftq..KTPVFALSQDAQARNL
  19 MLHILMRSPFETNM-VLLMNMLESVDDILMLQNSVVLALKNNVFln7sySVSMYALKQDLCARGI
  20 ------KSPFETNV-SLVISMLKKSDDFLALQDGVLIALKDNIFlk7msPVKLYLIKEDVYARGI
  21 ILHTVNKSPFERNSLESCLKFATEGASVLLFEDGIYAALAGTRVes9lgKLKLYVLGPDLKARGF
  22 MLHTINKSPFENNTFTTCVRFLQPGDPVLFIEDGVYAVQAGNRFg10kkNNPVYALKPDLDARGI
  23 MLYTLSKAQYDLNELQPILAQITENDALVLWQDGVLLAVKYPQLftp..ISHIFVLANDLEARGL
  24 MLHIIKTVS----ALEDAFALYSEQDAALLIEDAVYAANPQHKAfshvkHATVFALESDIQARGM
  25 MLHLIKSSH----VLEEALLLCTASDAIVLLEEAVYAATSVHPLqsllpKQGVYVLHGDVLARGL
  26 MLHLIKSSH----ALEEALLLCTASDAIVLLEEAVYAATSVHPLqsllpKQGVYVLHGDVLARGL
  27 MLHMVNKSPFQNGGLDSCLRFASAGDCILLMEDAAFAAATGTAKsa9ckKFKVYALSADIKARAV
  28 MLHIVKHLE----KLPLLSAYLLDGDVVLLTENAVYAAAVHSPYqa6ndQNLWLVLYEDLHARGW
  29 -LHVLSRSPFNDGRLGSCLYLLNPGDGLLLCGDAVHALLAGSHAcq9paEIELFALLEDLQARGI


                 70        80       
                 |         |       
   1 SEEDS...KVPLITYSEFIDLLEGEEKFIG
   2 VDKVDe..SFEVIDYSGFVSLSVQHEAQM-
   3 SEEDS...KVPLITYSEFIDLLEGEEKFIG
   4 RKNISr..EFILINYIHFVSLTLKHKKQM-
   5 VGQISd..NATLISYTHFVDLTLRHQQQL-
   6 HKNISs..SFILISYIDFVNLTLKNKKQI-
   7 TGQISn..DIIPIDYTDFVRLTVKHSGQM-
   8 TGQISn..DIILIDYTDFVRLTVKHPSQM-
   9 TGRISn..DIIPIDYTDFVRLTVKHSSQM-
  10 TGQILn..DIIPIDYTDFVRLTVKHSSQM-
  11 GERLK...NINQIDYNEFVAQSLLHDKVI-
  12 GGQISd..SVVRVDYTEFVRLTVKYANQM-
  13 GGQISd..SVVRVDYTEFVRLTVKYANQM-
  14 DEKDS...EVTLVDYDGWAELIEKEEKVI-
  15 YQFVSsieNVKTISLTELVELTEQYFPQL-
  16 TALLPqssKIKLISIEELVGITENYLPQL-
  17 DDQVSd..KVQVIDYTDFVNLTVKHHQQ--
  18 S---L...SIPTISLTEFIKLTEKYFPQI-
  19 LDNISp..NVNVIGYNRFVDLTVKHKQQM-
  20 RKNISr..EFILINYIHFVSLTLKHKKQM-
  21 SDERVip.GISVVDYAGFVDLTTEC-----
  22 SAIAE...GVKTVDYAGFVDLVEEH-----
  23 T--LA...NYQLLSFPDFIQVTEKFYPHI-
  24 ANRISp..SVTVVDYVGFVELTAKHDKSL-
  25 ESRLSt..NVAIVDYHQLVDLTVEHSPSL-
  26 ESRLSt..NIAMVDYHQLVDLTVEHSPSL-
  27 KSVIE...GIEVIDYAGFVDLVDQ------
  28 LEKCDp..RISVVTMSDFVDLTVTHDKSI-
  29 EDVPA...RLVAVDYPGFVELATRFDK---