# List of top-scoring protein chains for T0224.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1eerB 227 5.49e-02 1eerB b.1.2.1 22011 b.1.2.1 22012 1cn4A 228 5.53e-02 1eerB b.1.2.1 22027 b.1.2.1 22028 1ebpA 211 6.75e-02 1eerB b.1.2.1 22023 b.1.2.1 22024 1ernA 213 6.78e-02 1eerB b.1.2.1 22019 b.1.2.1 22020 1ebaA 215 6.82e-02 1eerB b.1.2.1 22015 b.1.2.1 22016 1d7yA 408 3.49e-01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1jatB 138 3.64e+00 1jatB d.20.1.1 62819 1f6tA 155 5.80e+00 1npk d.58.6.1 39110 1s29A 92 5.82e+00 1f3fA 155 5.92e+00 1npk d.58.6.1 39101 1fukA 165 5.95e+00 1fukA c.37.1.19 32409 1hlwA 155 6.00e+00 1npk d.58.6.1 39100 1npk 154 6.15e+00 1npk d.58.6.1 39099 1ndk 155 6.46e+00 1npk d.58.6.1 39118 1mn7A 155 6.61e+00 d.58.6.1 79316 1uekA 275 6.82e+00 d.14.1.5 88483 d.58.26.5 88484 1knwA 425 6.99e+00 1cb0A 283 7.15e+00 1cb0A c.56.2.1 33790 1leo 150 8.15e+00 1npk d.58.6.1 39125 1ncl 150 8.18e+00 1npk d.58.6.1 39109 1am2 199 8.33e+00 1am2 b.86.1.2 28381 1cp9B 553 8.49e+00 1ajqB 1fc4A 401 8.52e+00 1bs0A c.67.1.4 59760 3ncmA 92 8.74e+00 3ncmA b.1.1.4 21702 2his 312 1.02e+01 1taxA c.1.8.3 28918 1i70A 96 1.11e+01 d.1.1.2 61862 1p0hA 318 1.11e+01 1fh9A 312 1.12e+01 1taxA c.1.8.3 28913 1uciA 96 1.13e+01 1lniA 96 1.13e+01 d.1.1.2 74046 1lwxA 155 1.13e+01 1npk d.58.6.1 39119 1fnhA 271 1.23e+01 1fnhA b.1.2.1 21976 b.1.2.1 21977 b.1.2.1 21978 1ucjA 96 1.24e+01 1i8vA 96 1.25e+01 d.1.1.2 61985 1boxA 96 1.34e+01 1rgeA d.1.1.2 36038 1fuuA 394 1.37e+01 1qvaA c.37.1.19 32412 1gmpA 96 1.48e+01 1rgeA d.1.1.2 36036 1uckA 96 1.62e+01 1mqmA 329 1.83e+01 1bygA 278 1.88e+01 1fmk d.144.1.7 41705 1uclA 96 1.92e+01 1jx7A 117 1.93e+01 c.114.1.1 77195 1smlA 269 1.99e+01 1smlA d.157.1.1 42053 1m32A 366 1.99e+01 c.67.1.3 78508 1hhqA 155 2.03e+01 1npk d.58.6.1 61044 1o14A 331 2.05e+01 c.72.1.1 80763 1ry6A 360 2.15e+01 1rxxA 421 2.19e+01 1byfA 125 2.33e+01 1byfA d.169.1.1 42419 1qz1A 291 2.35e+01 1nogA 177 2.44e+01 a.25.2.2 85923 3hmgA 328 2.49e+01 1hgeA b.19.1.2 23825 1s6rA 359 2.57e+01 1mgrA 99 2.61e+01 d.1.1.2 79106 1epfA 191 2.61e+01 2ncm b.1.1.4 21694 b.1.1.4 21695 1lox 662 2.63e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1vkfA 188 2.65e+01 1e9iA 431 2.70e+01 c.1.11.1 64818 d.54.1.1 64819 1rgzA 363 2.80e+01 1onhA 364 2.80e+01 1jj2M 186 2.83e+01 1ffkK c.55.4.1 63098 1pv8A 330 2.89e+01 1e51A 330 2.89e+01 1b4kA c.1.10.3 59254 1l1qA 186 2.90e+01 c.61.1.1 77653 1eymA 107 2.94e+01 1fkj d.26.1.1 38403 1ub7A 322 3.01e+01 c.95.1.1 88402 c.95.1.1 88403 1bl4A 107 3.05e+01 1fkj d.26.1.1 38393 1fkj 107 3.05e+01 1fkj d.26.1.1 38384 1tcoC 107 3.12e+01 1fkj d.26.1.1 38426 1nltA 248 3.15e+01 1bkf 107 3.21e+01 1fkj d.26.1.1 38382 1l0gA 358 3.22e+01 e.3.1.1 73400 1rvxA 327 3.27e+01 1ru7A 327 3.28e+01 1pkhA 204 3.38e+01 2visC 282 3.39e+01 1hgeA b.19.1.2 23807 1k9aA 450 3.40e+01 b.34.2.1 72188 d.93.1.1 72189 d.144.1.7 72190 1ffb 214 3.43e+01 1cex c.23.9.1 31305 1l0dA 358 3.47e+01 e.3.1.1 73394 1pi4A 358 3.49e+01 2virC 282 3.54e+01 1hgeA b.19.1.2 23812 1fkl 107 3.55e+01 1fkj d.26.1.1 38423 1j5vA 351 3.55e+01 c.72.1.1 71585 1l0fA 358 3.56e+01 e.3.1.1 73398 2vitC 282 3.59e+01 1hgeA b.19.1.2 23808 1fr1A 361 3.59e+01 1gceA e.3.1.1 42734 1fsyA 358 3.62e+01 1gceA e.3.1.1 60016 1my8A 358 3.62e+01 e.3.1.1 85236 1hgeA 328 3.63e+01 1hgeA b.19.1.2 23816 2hmgA 328 3.64e+01 1hgeA b.19.1.2 23828 1hgjA 328 3.64e+01 1hgeA b.19.1.2 23801 1prtB 196 3.65e+01 1bcpB b.40.2.1 25116 d.169.1.2 42425 1i5qA 358 3.65e+01 1gceA e.3.1.1 61820 2viuA 328 3.65e+01 1hgeA b.19.1.2 23797 1ptoH 198 3.70e+01 1bcpB b.40.2.1 25126 d.169.1.2 42435 1bcpB 199 3.71e+01 1bcpB b.40.2.1 25120 d.169.1.2 42429 2bltA 361 3.94e+01 1gceA e.3.1.1 42739 1e6yC 247 3.95e+01 1mroC d.58.31.1 39441