# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d7yA 408 3.81e-01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1bcpB 199 9.32e-01 1bcpB b.40.2.1 25120 d.169.1.2 42429 1ndk 155 1.21e+00 1npk d.58.6.1 39118 1f3fA 155 1.49e+00 1npk d.58.6.1 39101 1npk 154 1.63e+00 1npk d.58.6.1 39099 1s29A 92 2.63e+00 1jx7A 117 3.12e+00 c.114.1.1 77195 1cozA 129 3.58e+00 1cozA c.26.1.2 31598 1m32A 366 4.40e+00 c.67.1.3 78508 1a8rA 221 8.13e+00 1a8rA d.96.1.1 40587 1jxhA 288 9.10e+00 c.72.1.2 67415 1pls 113 9.61e+00 1pls b.55.1.1 26965 2frvA 264 1.43e+01 2frvA e.19.1.1 43303 1k3sA 113 1.43e+01 d.198.1.1 68120 1bcpC 199 1.46e+01 1bcpB b.40.2.1 25121 d.169.1.2 42430 1l1sA 113 1.53e+01 c.114.1.1 73484 1dhpA 292 1.65e+01 1dhpA c.1.10.1 29097 1svy 114 1.66e+01 1svy d.109.1.1 40831 2trxA 108 1.70e+01 1thx c.47.1.1 32719 1oeyJ 107 1.72e+01 1gdtA 183 1.73e+01 2rslA a.4.1.2 16021 c.53.1.1 33348 1qjcA 158 2.02e+01 1b6tA c.26.1.3 63328 1fdr 248 2.03e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1oi2A 366 2.04e+01 c.32.1.2 87039 d.79.2.2 87040 1b6tA 159 2.04e+01 1b6tA c.26.1.3 31600 1a8l 226 2.08e+01 1a8l c.47.1.2 32777 c.47.1.2 32778 1heiA 451 2.10e+01 1heiA c.37.1.14 32463 c.37.1.14 32464 1kebA 108 2.15e+01 c.47.1.1 77341 1f60A 458 2.32e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1a8y 367 2.41e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1fm0E 150 2.45e+01 1fmaE d.41.5.1 38629 1c9fA 90 2.45e+01 1c9fA d.15.2.1 37639 1kqfB 294 2.52e+01 d.58.1.5 75900 f.23.22.1 75901 1g6oA 330 2.61e+01 1g6oA c.37.1.11 32430 1hqvA 191 2.66e+01 1hqvA a.39.1.8 61160 1h10A 125 2.67e+01 b.55.1.1 83446 3psg 370 2.78e+01 1smrA b.50.1.2 26841 1ghtA 105 2.78e+01 2rslA c.53.1.1 60526 1booA 323 2.78e+01 1booA c.66.1.11 34248 1g4yR 148 2.83e+01 1cll a.39.1.5 60252 1ggzA 148 2.84e+01 a.39.1.5 70176 1fmaE 150 2.85e+01 1fmaE d.41.5.1 38630 1gc0A 398 2.88e+01 c.67.1.3 70168 1cfyA 143 2.89e+01 1cof d.109.1.2 40858 1ej2A 181 2.92e+01 1f9aA c.26.1.3 59414 1jatB 138 2.98e+01 1jatB d.20.1.1 62819 1rthA 560 2.99e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1fukA 165 3.02e+01 1fukA c.37.1.19 32409 1kf6B 243 3.03e+01 a.1.2.1 72397 d.15.4.2 72398 1cof 143 3.18e+01 1cof d.109.1.2 40860 1gqoP 143 3.24e+01 c.23.13.1 76310 1v4sA 455 3.36e+01 1op4A 159 3.41e+01 1jv1A 505 3.50e+01 c.68.1.5 71892 1m2aA 110 3.52e+01 c.47.1.11 78472 1k9uA 78 3.65e+01 a.39.1.10 84348 1ne8A 117 3.67e+01 b.34.6.2 80424 1exrA 148 3.69e+01 1cll a.39.1.5 17299 1lu4A 136 3.76e+01 1l8rA 101 3.80e+01 a.6.1.4 73700 1cdq 77 3.98e+01 1cds g.7.1.3 44459