# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ndk 155 4.80e-01 1npk d.58.6.1 39118 1jx7A 117 5.91e-01 c.114.1.1 77195 1f3fA 155 6.57e-01 1npk d.58.6.1 39101 1npk 154 7.35e-01 1npk d.58.6.1 39099 1l1sA 113 1.01e+00 c.114.1.1 73484 1m32A 366 1.51e+00 c.67.1.3 78508 1d7yA 408 1.95e+00 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1bcpB 199 1.98e+00 1bcpB b.40.2.1 25120 d.169.1.2 42429 1vkfA 188 2.10e+00 1ghtA 105 2.33e+00 2rslA c.53.1.1 60526 1s29A 92 2.60e+00 1booA 323 2.86e+00 1booA c.66.1.11 34248 1jxhA 288 3.53e+00 c.72.1.2 67415 2cbf 234 4.20e+00 1cbf c.90.1.1 35588 1dhpA 292 5.29e+00 1dhpA c.1.10.1 29097 1cozA 129 5.44e+00 1cozA c.26.1.2 31598 2trxA 108 6.71e+00 1thx c.47.1.1 32719 1qjcA 158 6.89e+00 1b6tA c.26.1.3 63328 1q9uA 130 7.02e+00 1jnyA 435 7.30e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1l8rA 101 7.73e+00 a.6.1.4 73700 1gc0A 398 7.91e+00 c.67.1.3 70168 2sniI 83 8.62e+00 2sniI d.40.1.1 38573 1gdtA 183 8.85e+00 2rslA a.4.1.2 16021 c.53.1.1 33348 1o7fA 469 9.31e+00 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1cfyA 143 9.34e+00 1cof d.109.1.2 40858 1ge8A 249 9.35e+00 1plq d.131.1.2 41398 d.131.1.2 41399 1kqfB 294 9.36e+00 d.58.1.5 75900 f.23.22.1 75901 1jb9A 316 9.37e+00 1fnc b.43.4.2 62840 c.25.1.1 62841 1pls 113 9.84e+00 1pls b.55.1.1 26965 1cof 143 1.04e+01 1cof d.109.1.2 40860 1pydA 556 1.14e+01 1zpdA c.31.1.3 31735 c.36.1.5 31773 c.36.1.9 31774 1pvdA 537 1.15e+01 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1b6tA 159 1.21e+01 1b6tA c.26.1.3 31600 1fukA 165 1.24e+01 1fukA c.37.1.19 32409 1jysA 242 1.30e+01 c.56.2.1 77216 2frvA 264 1.34e+01 2frvA e.19.1.1 43303 1m5q1 130 1.37e+01 1a8rA 221 1.42e+01 1a8rA d.96.1.1 40587 1k3sA 113 1.43e+01 d.198.1.1 68120 1plr 258 1.46e+01 1plq d.131.1.2 41390 d.131.1.2 41391 1k9uA 78 1.47e+01 a.39.1.10 84348 1ponB 36 1.48e+01 1ponB 1a8y 367 1.54e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1fdr 248 1.80e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1hh1A 143 1.81e+01 1gefA c.52.1.18 61036 1q33A 292 1.89e+01 1qpbA 563 1.89e+01 1zpdA c.31.1.3 31739 c.36.1.5 31781 c.36.1.9 31782 1ro2A 216 1.89e+01 1c7nA 399 1.91e+01 1d2fA c.67.1.3 34413 1oi2A 366 1.93e+01 c.32.1.2 87039 d.79.2.2 87040 1isiA 265 1.97e+01 e.4.1.1 71394 1fzcA 87 1.99e+01 1fzcA h.1.8.1 45590 1o1xA 155 2.00e+01 c.121.1.1 86553 1a8p 258 2.09e+01 1fdr b.43.4.2 25654 c.25.1.1 31544 1lw6I 64 2.13e+01 d.40.1.1 74294 1jjgA 102 2.15e+01 b.40.4.5 71696 1k7jA 206 2.16e+01 d.115.1.1 72103 1k07A 263 2.21e+01 d.157.1.1 77218 1sr9A 644 2.24e+01 1f60A 458 2.28e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1g4yR 148 2.29e+01 1cll a.39.1.5 60252 3nn9 388 2.29e+01 2qwc b.68.1.1 27566 1psrA 100 2.31e+01 1psrA a.39.1.2 17180 1zac 90 2.34e+01 1ncx a.39.1.5 17236 1jv1A 505 2.42e+01 c.68.1.5 71892 1q5qA 259 2.45e+01 1h10A 125 2.46e+01 b.55.1.1 83446 1kk9A 221 2.46e+01 d.115.1.1 77432 1im5A 180 2.55e+01 c.33.1.2 66211 2dhqA 146 2.61e+01 2dhqA c.23.13.1 31382 5nn9 388 2.73e+01 2qwc b.68.1.1 27563 1iqpA 327 2.79e+01 a.80.1.1 62649 c.37.1.20 62650 1svy 114 2.81e+01 1svy d.109.1.1 40831 1ggzA 148 2.84e+01 a.39.1.5 70176 2rhe 114 2.84e+01 8fabA b.1.1.1 20523 1iz5A 249 2.90e+01 d.131.1.2 83834 d.131.1.2 83835 1dmr 823 2.90e+01 1dmr b.52.2.2 26904 c.81.1.1 35312 1ro0A 216 3.12e+01 1hdfA 102 3.14e+01 1ag4 b.11.1.1 23627 1q1gA 276 3.22e+01 1hm6A 346 3.31e+01 1avc a.65.1.1 18147 1ru4A 400 3.39e+01 1ne8A 117 3.40e+01 b.34.6.2 80424 1ordA 730 3.41e+01 1ordA c.23.1.4 31274 c.67.1.5 34503 d.125.1.1 41124 1kebA 108 3.42e+01 c.47.1.1 77341 1iweA 457 3.64e+01 c.37.1.10 71486 1a8vA 121 3.65e+01 1a62 a.140.3.1 64712 b.40.4.5 64713 2viuA 328 3.65e+01 1hgeA b.19.1.2 23797 1eayC 74 3.67e+01 1eayC d.58.24.1 39386 1m6yA 301 3.71e+01 a.60.13.1 78716 c.66.1.23 78717 1hgeA 328 3.74e+01 1hgeA b.19.1.2 23816 2bb2 181 3.96e+01 2bb2 b.11.1.1 23604 b.11.1.1 23605