(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0224 TM0979, Thermotoga maritima
    • gi|45530361|ref|ZP_00181493.1|_1:79 COG2168: Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Moorella thermoacetica ATCC 39073]
                     10           20            30             40      
                     |            |             |              |      
   1 ...M...A.LVLVKYGTD...HPVEKLKIRS..A..KAEDKIVLIQNGVFWA.....LEE.....
   2 ...M...L.HTLHRSPWL...TDFAAL-LRL..L..SEGDELLLLQDGVTAA.....VDGnr7sl
   3 ...M...L.HTLHRSPWL...TDFAAL-LRL..L..SEGDELLLLQDGVTAA.....VDGnr7sl
   4 ...M...L.HTLHRSPWL...TDFAAL-LRL..L..SEGDELLLLQDGVTAA.....VDGnr7sl
   5 ...M...L.HTLHRSPWL...TDFAAL-LRL..L..SEGDELLLLQDGVTAA.....VDGnr7sl
   6 ...M...L.HTVTTSPFH...TQSLQSCLRY..I..SQDDEILLLQDAVFAG.....LREni7ii
   7 ...M...L.HTINKSPFE...NNTFTTCVRF..L..QPGDPVLFIEDGVYAV.....QAGn10sv
   8 ...M...L.HTLPHCASG...VDFPAL-LRL..L..KEGDALLLLQDGVTVA.....IEGnr7sl
   9 ...M...L.HTLPHCASS...VDFPAL-LRL..L..KEGDALLLLQDGVTVA.....IEGnr7sl
  10 ...M...L.YTVGRSPYQ...CDF-NVISKL..L..ARGDDILFIQDGVLAG.....IEGnc7al
  11 ...M...L.YTVSHSPYH...CD-LSALLRL..A..TSEDDILLLQDGVIAA.....LKEse7ll
  12 ...M...L.HTLMKSPFE...TNV-SLVISM..L..KKSDDFLALQDGVLIA.....LKDni7si
  13 ...M...L.HMVNKSPFQ...NGGLDSCLRF..A..SAGDCILLMEDAAFAA.....ATGta9ea
  14 ...Msi.L.HTVNKSPFE...RNSLESCLKF..A..TEGASVLLFEDGIYAA.....LAGtr9te
  15 ...M...L.HILMRSPFE...TNMV-LLMNM..L..ESVDDILMLQNSVVLA.....LKNnv7ki
  16 ...M...A.LIIVKKSPS...EKISEFLLNL..A..LPQDKVLFVQDGVIFA.....ACKnvknl
  17 ...Mi..L.HHIQTSPSR...DNALKLCLRY..A..CKEDAILLSSDGVNAL.....LLRqwam.
  18 ...MattL.HVLSRSPFN...DGRLGSCLYL..L..NPGDGLLLCGDAVHAL.....LAGsh9el
  19 ...M...A.LVLVKYGTD...HPVEKLKIRS..A..KAEDKIVLIQNGVFWA.....LEE.....
  20 ...M...L.HTLMKSPFE...TNI-SFFSGM..L..KKTDDFLALQDGVLIA.....LIDni7ki
  21 ...M...L.YTFSQSSYD...INELTGYLDQ..I..TPQDVLVLWQDAVLLP.....LKHpqif.
  22 ...M...L.YTFSQSSYD...INELTGYLDQ..I..TPQDVLVLWQDAVLLP.....LKHpqlf.
  23 ...Msa.L.HTVNKSPFE...RSCLEACLGH..A..QPGDAVLLMEDAVIAA.....LSGta9ad
  24 ...Mat.L.HIVSHSPFA...DTRLDSCLRL..L..GTHDGLLLCGDAAYAL.....MPAsa9qp
  25 ...Mat.L.HVLSHSPFA...DTRLDSCLRL..L..GNDDGVLLCGDATYAL.....MPSct9qp
  26 ...M...L.YTFSKANYS...LDDLQIILTH..I..TKQDIIVLWQDGVLLA.....VKYpfl..
  27 ...M...L.YTFAEASYP...EGVLLTYLQQ..T..TSQDAIVLWQDGVYLC.....VKYpevf.
  28 ...M...L.YTFSQSDYP...KTELDDYFSY..I..TEKDAVVLWQDGVLLA.....IKYpdyf.
  29 ...Mtt.L.HLLSRSPFG...TP-LDSTLRL..L..GVRDGLLLCGDACHAL.....QPGsa9eh
  30 ...Mst.L.HVLSHSPFG...DERLTSCLRL..L..GASDALLLSGDAAYAL.....QPGta7al
  31 ...-...-.---MKSPFE...TNV-SLVISM..L..KKSDDFLALQDGVLIA.....LKDni7si
  32 ...Mkt.L.HVIAHSPFG...DERLASCLRL..L..GAEDALLLCGDAVYAL.....RSGse9qa
  33 ...M...L.HIIKTVSAL...EDAFALY---..-..SEQDAALLIEDAVYAA.....NPQhkafs
  34 ...M...L.YTLSKAQYD...LNELQPILAQ..I..TENDALVLWQDGVLLA.....VKYpq...
  35 ...M...L.H-LIKSSH-...--ALEEALLL..C..TASDAIVLLEEAVYAAtsvhpLQS.....
  36 ...M...L.H-LIKSSH-...--VLEEALLL..C..TASDAIVLLEEAVYAAtsvhpLQS.....
  37 ehd-...V.FLLTKPPFS...T-RSELCLKL..AarSGNARLYLAGDGVYHL.....LSG.....
  38 qsd-...V.FLLTKSPFS...-PRSEFCLKLaaC..SGKARIYLAGDGVYHL.....LTG.....
  39 ...M...L.HIVKH----...LEKLPLLSAY..L..LDGDVVLLTENAVYAA.....AVHspyqa
  40 ...Mgs.VgFLVTKSPSElsfKTFLDLVDIW..C..EEYLKVYLISNGIYAA.....MEGnr9re
  41 eyd-...V.FLLTKPPFS...-PRAELCLKL..AarSGNARLYLAGDGVYHL.....LCG.....
  42 ...-...-.---------...---------M..T..QPGSEVILIQDAVLAL.....HKAp11qa


                   50         60                      70             80
                   |          |                       |              |
   1 L..ET..PAK.VY.AIKDDFLARG.Y.S...E....E...D.S.K.VPLIT..YSE..FI.DLLE
   2 R..NA..PIK.VY.ALNEDLIARG.L.T...G....Q...I.S.NdIIPID..YTD..FV.RLTV
   3 R..NA..PIK.VY.ALNEDLIARG.L.T...G....R...I.S.NdIIPID..YTD..FV.RLTV
   4 R..NA..PIK.VY.ALNEDLIARG.L.T...G....Q...I.S.NdIILID..YTD..FV.RLTV
   5 R..NA..PIK.VY.ALNEDLIARG.L.T...G....Q...IlN.D.IIPID..YTD..FV.RLTV
   6 K..IS..GVK.IY.LLKEDLLARG.IvD...K....V...D.E.S.FEVID..YSG..FV.SLSV
   7 L..KK..NNP.VY.ALKPDLDARG.I.S...A....I...A.E.G.VKTVD..YAG..FV.DLVE
   8 R..DA..PIT.VY.ALKEDIDARG.L.G...G....Q...I.S.DsVVRVD..YTE..FV.RLTV
   9 R..DA..PIT.VY.ALKEDIDARG.L.G...G....Q...I.S.DsVVRVD..YTE..FV.RLTV
  10 I..SC..GAA.LY.ALKEDIEARG.L.D...D....Q...V.SdK.VQVID..YTD..FV.NLTV
  11 L..NN..PAS.LF.VLEDDVIARG.L.V...G....Q...I.SdN.ATLIS..YTH..FV.DLTL
  12 I..MS..PVK.LY.LIKEDVYARG.I.R...K....N...I.SrE.FILIN..YIH..FV.SLTL
  13 A..CK..KFK.VY.ALSADIKARA.V.K...S....V...I.E.G.IEVID..YAG..FV.DLVD
  14 A..LG..KLK.LY.VLGPDLKARG.F.S...Der..V...I.P.G.ISVVD..YAG..FV.DLTT
  15 L..SY..SVS.MY.ALKQDLCARGiL.D...N....I...S.P.N.VNVIG..YNR..FV.DLTV
  16 V..KE..GVE.LF.ALKEDFIARG.F.D...E....K...D.S.E.VTLVD..YDG..WA.ELIE
  17 A..LS..PFK.VM.VLKDDVVARG.L.G...E....R...L.K.N.INQID..YNE..FV.AQSL
  18 M..PA..EIE.LF.ALLEDLQARG.I.E...D....V...P.A.R.LVAVD..YPG..FV.ELAT
  19 L..ET..PAK.VY.AIKDDFLARG.Y.S...E....E...D.S.K.VPLIT..YSE..FI.DLLE
  20 T..FS..SEN.LY.VIKEDVYARG.IhK...N....I...S.S.S.FILIS..YID..FV.NLTL
  21 A..CL..NIP.VM.FLQPDVEARN.L.S...EkifvQ...L.P.Q.MKIIS..LDE..LV.ELTV
  22 A..CL..NIP.VM.FLQPDVEARN.L.S...EkifvQ...L.P.Q.MKIIS..LDE..LV.ELTV
  23 A..AK..TLR.LA.VLGPDLAARG.L.Dpt.K....V...V.S.G.ISVVD..YAG..FV.DLAA
  24 L..ID..SVK.LF.VLDEDLKARD.L.-...Q....L...P.A.G.VNSID..YPA..FV.DLSL
  25 L..VE..SSQ.LF.ALDEDLRARN.L.-...P....L...P.A.G.VNSID..YPA..FV.ELSL
  26 F..TQ..KTP.VF.ALSQDAQARN.L.S...-....-...L.S.-.IPTIS..LTE..FI.KLTE
  27 S..SL..NTS.CY.ALDIDVGARN.L.Y...Q....FvssI.E.N.VKTIS..LTE..LV.ELTE
  28 A..KC..KGN.CM.ILKQDILARN.L.TallP....Q...S.S.K.IKLIS..IEE..LV.GITE
  29 L..PD..SVA.LH.ALAEDLEARN.L.M...-....A...P.E.R.VRVVD..YPG..FV.ELCT
  30 E..SR..KVK.LF.VLAEDAQARA.V.-...Q....V...P.D.W.AEAID..YPA..FV.ELSI
  31 I..MS..PVK.LY.LIKEDVYARG.I.R...K....N...I.SrE.FILIN..YIH..FV.SLTL
  32 A..GL..AQR.LF.ALDEDVQARA.V.G...N....D...L.A.K.A--VD..YAG..FV.ELSL
  33 H..VK..HAT.VF.ALESDIQARG.M.A...N....R...I.SpS.VTVVD..YVG..FV.ELTA
  34 L..FT..PIShIF.VLANDLEARG.L.T...-....-...L.A.N.YQLLS..FPD..FI.QVTE
  35 L..LP..KQG.VY.VLHGDVLARG.L.E...S....R...L.StN.IAMVD..YHQ..LV.DLTV
  36 L..LP..KQG.VY.VLHGDVLARG.L.E...S....R...L.StN.VAIVD..YHQ..LV.DLTV
  37 IqeLP..GCT.VY.ACQEDLEARA.I.K...G....R...-.R.K.ITVPEnfYAA..FIeDLME
  38 I..EEqqEFK.IY.ACKEDLEARA.I.-...R....A...G.D.K.VTVLDdfYTD..FIeDIME
  39 S..IN..DQN.LWlVLYEDLHARGwL.E...K....C...D.P.R.ISVVT..MSD..FV.DLTV
  40 I..SR..TGN.VF.ARKEDLMARG.I.T...Rem..L...I.D.G.VEVLE..GLDrvVV.DIME
  41 IqeLP..GCM.IY.ACQEDLEARA.V.-...N....A...R.E.K.AMVPEnfYAV..FIeDVME
  42 R..VQ..GIN.FY.ALAADLEARG.L.D...Tka..T...Y.P.G.TRVID..YGE..MV.DLAV


                  
                 
   1 GEE.KFI.G...
   2 KHS.GQMaW...
   3 KHS.SQMaW...
   4 KHP.SQMaW...
   5 KHS.SQMaW...
   6 QHE.AQM.Kwe.
   7 EHQvNSW.L...
   8 KYA.NQMaW...
   9 KYA.NQMaW...
  10 KHH.QQFaW...
  11 RHQ.QQLaW...
  12 KHK.KQM.Tw..
  13 QNKtHSW.L...
  14 ECD.TVQ.Awl.
  15 KHK.QQMsW...
  16 KEE.KVI.S...
  17 LHD.KVI.Tw..
  18 RFD.KVN.Swl.
  19 GEE.KFI.G...
  20 KNK.KQIiW...
  21 TFT.PQF.Al..
  22 TFT.PQL.Al..
  23 ETK.ATN.Awl.
  24 RFD.KVN.Twl.
  25 RFD.KVN.Twl.
  26 KYF.PQI.Af..
  27 QYF.PQL.Al..
  28 NYL.PQL.Sl..
  29 RYD.KVN.Gwl.
  30 QYD.KVN.Swl.
  31 KHK.KQM.Tw..
  32 QYD.KVN.Swl.
  33 KHD.KSL.Twd.
  34 KFY.PHI.Af..
  35 EHS.PSL.Tws.
  36 EHS.PSL.Tws.
  37 HCR.QAY.Tf..
  38 HCR.HEY.Tf..
  39 THD.KSI.Tw..
  40 NLD.MVF.Tf..
  41 HCK.HAY.Tf..
  42 KHG.KVL.-...