%  SAM: /projects/compbio/bin/i686/hmmscore v3.5 (May 1, 2004) compiled 08/09/04_15:52:12
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  T0224.t04-2track-undertaker   Host: abyss    Sun Aug 15 20:34:58 2004
%  karplus                       Dir:  /projects/compbio/experiments/protein-predict/casp6/T0224
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  T0224.a2m,T0224.t04.str2.seq
% Database Files:  /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.2ds
%

MODLIBMOD T0224.t04-2track-undertaker T0224.t04-2track-undertaker model number 1
% Calibration data for 6796 database sequences
% 2701 of 6796 scores > calibrate_threshold (0) used.
trackmod T0224.t04.w0.5.mod,T0224.t04.str2.mod
trackcoeff 1.0,0.3
alphabet protein,STR2
lambda 4.378903
tau 0.654779
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD