# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jx7A 117 1.33e-02 c.114.1.1 77195 1l1sA 113 2.80e-01 c.114.1.1 73484 1d7yA 408 4.01e-01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1bcpB 199 4.26e-01 1bcpB b.40.2.1 25120 d.169.1.2 42429 1zpdA 568 9.80e-01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1np6A 174 1.27e+00 c.37.1.10 85954 1m32A 366 1.29e+00 c.67.1.3 78508 1fdr 248 2.47e+00 1fdr b.43.4.2 25653 c.25.1.1 31543 1fukA 165 2.94e+00 1fukA c.37.1.19 32409 1pvdA 537 3.21e+00 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1a8p 258 3.35e+00 1fdr b.43.4.2 25654 c.25.1.1 31544 1p1cA 199 3.55e+00 c.66.1.16 87669 1bia 321 4.37e+00 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1npk 154 4.39e+00 1npk d.58.6.1 39099 1c0pA 363 5.19e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1f60A 458 5.36e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1qycA 308 5.46e+00 1cbf 285 5.74e+00 1cbf c.90.1.1 35587 1dhpA 292 5.88e+00 1dhpA c.1.10.1 29097 1miwA 404 6.14e+00 a.173.1.1 79162 d.218.1.4 79163 1a8rA 221 9.00e+00 1a8rA d.96.1.1 40587 1g4yR 148 9.40e+00 1cll a.39.1.5 60252 1s29A 92 9.68e+00 1j3mA 129 1.03e+01 1r94A 118 1.19e+01 2viuA 328 1.26e+01 1hgeA b.19.1.2 23797 1kqfB 294 1.46e+01 d.58.1.5 75900 f.23.22.1 75901 1oeyJ 107 1.54e+01 1nw3A 416 1.55e+01 c.66.1.31 86288 1ri5A 298 1.55e+01 1bhe 376 1.55e+01 1bhe b.80.1.3 28030 1eonA 245 1.62e+01 1rvaA c.52.1.2 33238 1amuA 563 1.65e+01 1amuA e.23.1.1 43351 1l8rA 101 1.93e+01 a.6.1.4 73700 1khxA 227 1.97e+01 b.26.1.1 68631 1dmuA 299 2.10e+01 1dmuA c.52.1.4 33294 1oe0A 230 2.11e+01 1exrA 148 2.12e+01 1cll a.39.1.5 17299 1jnyA 435 2.21e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1ii7A 333 2.23e+01 1ii7A d.159.1.4 62415 1oi2A 366 2.34e+01 c.32.1.2 87039 d.79.2.2 87040 3psg 370 2.42e+01 1smrA b.50.1.2 26841 1nqeA 594 2.42e+01 f.4.3.3 86027 1s98A 107 2.48e+01 1l3iA 192 2.49e+01 c.66.1.22 77676 1jp4A 308 2.53e+01 1jp4A e.7.1.1 63223 1b0pA 1231 2.58e+01 c.36.1.8 31831 c.36.1.12 31832 c.48.1.3 33104 c.64.1.1 34157 d.58.1.5 39003 1utcA 363 2.60e+01 1ek6A 348 2.62e+01 1xel c.2.1.2 29800 1smlA 269 2.65e+01 1smlA d.157.1.1 42053 1q9uA 130 2.70e+01 1hh1A 143 2.78e+01 1gefA c.52.1.18 61036 2sas 185 2.78e+01 2sas a.39.1.5 17258 1qdeA 224 2.86e+01 1qvaA c.37.1.19 32410 1f37A 110 2.92e+01 1f37A c.47.1.11 33088 1im5A 180 2.95e+01 c.33.1.2 66211 1kmvA 186 2.96e+01 c.71.1.1 72757 1aisB 200 3.02e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1p0hA 318 3.15e+01 1inlA 296 3.23e+01 c.66.1.17 66220 1epxA 370 3.34e+01 1fbaA c.1.10.1 29150 1jayA 212 3.39e+01 c.2.1.6 66478 1wdcC 156 3.43e+01 1wdcC a.39.1.5 17317 1sur 215 3.46e+01 1sur c.26.2.2 31620 1kekA 1231 3.48e+01 c.36.1.8 68524 c.36.1.12 68525 c.48.1.3 68526 c.64.1.1 68527 d.58.1.5 68528 1du9A 28 3.56e+01 g.3.7.2 44148 1gc0A 398 3.66e+01 c.67.1.3 70168 1ypcI 64 3.69e+01 2sniI d.40.1.1 38570 1dqsA 393 3.74e+01 1dqsA e.22.1.1 43347 1ofuA 320 3.78e+01 c.32.1.1 86972 d.79.2.1 86973 1tcrA 202 3.79e+01 1tcrA b.1.1.1 20605 b.1.1.2 21549 1ej2A 181 3.90e+01 1f9aA c.26.1.3 59414 1h2rS 267 3.91e+01 2frvA e.19.1.1 43310 1gdoA 240 3.98e+01 1gdoA d.153.1.1 41804