# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jx7A 117 1.72e-02 c.114.1.1 77195 1m32A 366 1.25e+00 c.67.1.3 78508 1d7yA 408 1.35e+00 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1nuuA 252 1.49e+00 c.26.1.3 86209 1l1sA 113 1.55e+00 c.114.1.1 73484 1np6A 174 2.03e+00 c.37.1.10 85954 1npk 154 2.16e+00 1npk d.58.6.1 39099 1c0pA 363 2.37e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1zpdA 568 2.91e+00 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1f60A 458 3.29e+00 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1bcpB 199 4.05e+00 1bcpB b.40.2.1 25120 d.169.1.2 42429 1pvdA 537 4.75e+00 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1dhpA 292 4.84e+00 1dhpA c.1.10.1 29097 1fukA 165 5.02e+00 1fukA c.37.1.19 32409 1ro2A 216 5.56e+00 1a8rA 221 5.68e+00 1a8rA d.96.1.1 40587 1aquA 297 5.72e+00 1aquA c.37.1.5 31942 1s29A 92 5.79e+00 1ri5A 298 5.91e+00 1ro0A 216 6.66e+00 1miwA 404 6.80e+00 a.173.1.1 79162 d.218.1.4 79163 1jnyA 435 6.81e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1ve9A 347 8.33e+00 2dhqA 146 8.81e+00 2dhqA c.23.13.1 31382 1h05A 146 9.23e+00 c.23.13.1 76433 1an9A 340 1.07e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 1amuA 563 1.12e+01 1amuA e.23.1.1 43351 1lw6I 64 1.13e+01 d.40.1.1 74294 1cbf 285 1.15e+01 1cbf c.90.1.1 35587 1l3iA 192 1.15e+01 c.66.1.22 77676 1j3mA 129 1.16e+01 1q9uA 130 1.25e+01 2dpmA 284 1.28e+01 2dpmA c.66.1.28 34246 1epxA 370 1.31e+01 1fbaA c.1.10.1 29150 1my7A 114 1.45e+01 b.1.18.1 79675 1bia 321 1.64e+01 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1p1cA 199 1.70e+01 c.66.1.16 87669 1eonA 245 1.81e+01 1rvaA c.52.1.2 33238 1k6dA 220 1.84e+01 c.63.1.2 72082 1oi2A 366 1.90e+01 c.32.1.2 87039 d.79.2.2 87040 1ypcI 64 2.04e+01 2sniI d.40.1.1 38570 1qv9A 283 2.13e+01 1im5A 180 2.14e+01 c.33.1.2 66211 1aa8A 347 2.26e+01 1an9A c.4.1.2 30619 d.16.1.3 37906 1ass 159 2.26e+01 1a6dA c.8.5.2 30818 1fdr 248 2.28e+01 1fdr b.43.4.2 25653 c.25.1.1 31543 1qvcA 145 2.32e+01 3ullA b.40.4.3 25284 1hm6A 346 2.32e+01 1avc a.65.1.1 18147 1g4yR 148 2.34e+01 1cll a.39.1.5 60252 1sat 471 2.61e+01 1sat b.79.1.1 28014 d.92.1.6 40300 1dmuA 299 2.75e+01 1dmuA c.52.1.4 33294 1qr0A 228 2.75e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1vkiA 181 2.76e+01 1g6gA 127 2.82e+01 1g6gA b.26.1.2 23916 1inlA 296 2.88e+01 c.66.1.17 66220 1a8p 258 2.90e+01 1fdr b.43.4.2 25654 c.25.1.1 31544 1fzqA 181 3.01e+01 1hurA c.37.1.8 32060 1r6xA 395 3.23e+01 1p0hA 318 3.23e+01 1jxhA 288 3.28e+01 c.72.1.2 67415 1vkfA 188 3.31e+01 1ko7A 314 3.42e+01 c.98.2.1 72797 c.91.1.2 72798 1oe0A 230 3.44e+01 1kmvA 186 3.45e+01 c.71.1.1 72757 1hh1A 143 3.49e+01 1gefA c.52.1.18 61036 1sr9A 644 3.65e+01 1l8rA 101 3.67e+01 a.6.1.4 73700 2viuA 328 3.73e+01 1hgeA b.19.1.2 23797 1q1gA 276 3.84e+01 4kbpA 432 3.91e+01 4kbpA b.1.12.1 22345 d.159.1.1 42064