# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jx7A 117 1.43e-01 c.114.1.1 77195 1miwA 404 6.85e-01 a.173.1.1 79162 d.218.1.4 79163 1m32A 366 7.52e-01 c.67.1.3 78508 1pvdA 537 1.54e+00 1zpdA c.31.1.3 31737 c.36.1.5 31777 c.36.1.9 31778 1ri5A 298 1.63e+00 1zpdA 568 2.12e+00 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1amuA 563 2.18e+00 1amuA e.23.1.1 43351 1l1sA 113 2.20e+00 c.114.1.1 73484 1a8p 258 2.36e+00 1fdr b.43.4.2 25654 c.25.1.1 31544 1fukA 165 3.04e+00 1fukA c.37.1.19 32409 1npk 154 3.12e+00 1npk d.58.6.1 39099 1ko7A 314 3.46e+00 c.98.2.1 72797 c.91.1.2 72798 1np6A 174 4.18e+00 c.37.1.10 85954 1d7yA 408 4.35e+00 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1bia 321 4.46e+00 1bia a.4.5.1 16083 b.34.1.1 24447 d.104.1.2 40787 1s29A 92 5.49e+00 1fdr 248 6.09e+00 1fdr b.43.4.2 25653 c.25.1.1 31543 2dhqA 146 6.49e+00 2dhqA c.23.13.1 31382 1j3mA 129 6.52e+00 1q9uA 130 7.41e+00 1qzgA 187 7.77e+00 1epxA 370 8.54e+00 1fbaA c.1.10.1 29150 1ro2A 216 8.54e+00 1lw6I 64 8.56e+00 d.40.1.1 74294 1hdfA 102 8.62e+00 1ag4 b.11.1.1 23627 1bcpB 199 9.24e+00 1bcpB b.40.2.1 25120 d.169.1.2 42429 1ro0A 216 9.89e+00 1cbf 285 1.00e+01 1cbf c.90.1.1 35587 1dmuA 299 1.01e+01 1dmuA c.52.1.4 33294 1nuuA 252 1.01e+01 c.26.1.3 86209 1l1qA 186 1.14e+01 c.61.1.1 77653 1luaA 287 1.22e+01 c.2.1.7 78216 c.58.1.4 78217 1c0pA 363 1.35e+01 1an9A c.4.1.2 30647 d.16.1.3 37934 1g6gA 127 1.42e+01 1g6gA b.26.1.2 23916 1bhe 376 1.46e+01 1bhe b.80.1.3 28030 2viuA 328 1.48e+01 1hgeA b.19.1.2 23797 1nw3A 416 1.49e+01 c.66.1.31 86288 1h05A 146 1.50e+01 c.23.13.1 76433 1a8y 367 1.51e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1a8rA 221 1.59e+01 1a8rA d.96.1.1 40587 1jb9A 316 1.66e+01 1fnc b.43.4.2 62840 c.25.1.1 62841 1im5A 180 1.70e+01 c.33.1.2 66211 1gc0A 398 1.71e+01 c.67.1.3 70168 1m7sA 484 1.72e+01 e.5.1.1 74574 1dqsA 393 1.84e+01 1dqsA e.22.1.1 43347 1t9kA 347 2.23e+01 1l3iA 192 2.29e+01 c.66.1.22 77676 1knwA 425 2.31e+01 1whsB 153 2.41e+01 1whtB 1whtB 153 2.45e+01 1whtB 1ofuA 320 2.46e+01 c.32.1.1 86972 d.79.2.1 86973 1h2wA 710 2.48e+01 b.69.7.1 76596 c.69.1.4 76597 1r6xA 395 2.56e+01 1b77A 228 2.58e+01 1b77A d.131.1.2 41362 d.131.1.2 41363 1ogdA 131 2.63e+01 1qvcA 145 2.69e+01 3ullA b.40.4.3 25284 1sat 471 2.72e+01 1sat b.79.1.1 28014 d.92.1.6 40300 1cozA 129 2.72e+01 1cozA c.26.1.2 31598 1bpoA 494 2.74e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1jsmA 325 2.81e+01 b.19.1.2 63264 1uirA 314 2.82e+01 1eonA 245 2.83e+01 1rvaA c.52.1.2 33238 1qycA 308 2.87e+01 1an9A 340 2.91e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 1ofuX 119 2.94e+01 c.37.1.22 86976 1ve9A 347 2.96e+01 1vi4A 174 2.98e+01 1vkfA 188 3.04e+01 1f7sA 139 3.11e+01 1cof d.109.1.2 40857 1go7P 462 3.12e+01 b.79.1.1 76245 d.92.1.6 76246 1utcA 363 3.15e+01 1jnyA 435 3.38e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1ypcI 64 3.49e+01 2sniI d.40.1.1 38570 1jayA 212 3.50e+01 c.2.1.6 66478 1oznA 285 3.64e+01 c.10.2.7 87621 1k7iA 479 3.78e+01 b.79.1.1 77281 d.92.1.6 77282 1q1gA 276 3.79e+01 1oe0A 230 3.84e+01 1vizA 240 3.85e+01 1n2sA 299 3.85e+01 c.2.1.2 79857 1f60A 458 3.87e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1huuA 90 3.87e+01 1huuA a.55.1.1 17897 1a62 130 3.87e+01 1a62 a.140.3.1 64708 b.40.4.5 64709 1my7A 114 3.89e+01 b.1.18.1 79675 1k6dA 220 3.91e+01 c.63.1.2 72082