# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jx7A 117 2.52e-02 c.114.1.1 77195 1knwA 425 7.07e-02 1npk 154 3.95e-01 1npk d.58.6.1 39099 1bfd 528 4.02e-01 1bfd c.31.1.3 31745 c.36.1.5 31801 c.36.1.9 31802 1l1qA 186 6.99e-01 c.61.1.1 77653 1ass 159 9.24e-01 1a6dA c.8.5.2 30818 1vjpA 394 1.15e+00 1lh0A 213 1.17e+00 c.61.1.1 73896 1m32A 366 1.20e+00 c.67.1.3 78508 2reb 352 1.44e+00 2reb c.37.1.11 32282 d.48.1.1 38767 1oroA 213 1.59e+00 1opr c.61.1.1 34093 1ubeA 349 1.65e+00 c.37.1.11 88412 d.48.1.1 88413 1opr 213 1.80e+00 1opr c.61.1.1 34091 1g8lA 411 2.00e+00 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1h05A 146 2.02e+00 c.23.13.1 76433 7a3hA 303 2.13e+00 7a3hA c.1.8.3 28817 1c0pA 363 2.17e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 2dhqA 146 2.67e+00 2dhqA c.23.13.1 31382 1jj2M 186 2.67e+00 1ffkK c.55.4.1 63098 1din 236 2.68e+00 1din c.69.1.9 34682 1v7zA 260 2.77e+00 1n3bA 216 2.79e+00 c.37.1.1 79959 1o57A 291 2.82e+00 1h2rS 267 2.99e+00 2frvA e.19.1.1 43310 1nnlA 225 3.00e+00 c.108.1.4 85906 1k7jA 206 3.05e+00 d.115.1.1 72103 1vhtA 218 3.18e+00 1aquA 297 3.22e+00 1aquA c.37.1.5 31942 1ubkS 267 3.46e+00 e.19.1.1 88423 1ks9A 291 3.55e+00 a.100.1.7 68857 c.2.1.6 68858 1k07A 263 3.93e+00 d.157.1.1 77218 1un7A 400 4.21e+00 1bouB 302 4.60e+00 1bouB c.56.6.1 33859 1amuA 563 4.66e+00 1amuA e.23.1.1 43351 1ualA 274 5.13e+00 c.116.1.4 88383 2pgd 482 5.19e+00 2pgd a.100.1.1 18778 c.2.1.6 30190 1smlA 269 5.36e+00 1smlA d.157.1.1 42053 1q1gA 276 5.45e+00 1j1iA 296 5.94e+00 c.69.1.10 83977 1apxA 249 6.56e+00 1ryc a.93.1.1 18669 1umdB 324 6.60e+00 1qb7A 236 6.64e+00 1qb7A c.61.1.1 34087 1aa8A 347 6.83e+00 1an9A c.4.1.2 30619 d.16.1.3 37906 1ni4B 341 7.17e+00 c.36.1.7 85729 c.48.1.2 85730 1fukA 165 7.97e+00 1fukA c.37.1.19 32409 1ve9A 347 8.25e+00 7taa 478 8.37e+00 7taa b.71.1.1 27778 c.1.8.1 28765 1jm1A 204 8.61e+00 b.33.1.1 71745 1ou0A 207 9.22e+00 1mkyA 439 9.33e+00 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1lc5A 364 9.35e+00 c.67.1.1 73827 1c4xA 285 9.77e+00 1c4xA c.69.1.10 34684 1jjvA 206 9.92e+00 c.37.1.1 71698 1rpnA 335 1.00e+01 1j6oA 268 1.00e+01 c.1.9.12 77088 1e19A 314 1.02e+01 1b7bA c.73.1.1 34967 1uekA 275 1.02e+01 d.14.1.5 88483 d.58.26.5 88484 1zpdA 568 1.02e+01 1zpdA c.31.1.3 31741 c.36.1.5 31785 c.36.1.9 31786 1n57A 291 1.05e+01 c.23.16.7 85328 1an9A 340 1.05e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 1l1sA 113 1.05e+01 c.114.1.1 73484 1m6iA 493 1.07e+01 c.3.1.5 74533 c.3.1.5 74534 d.87.1.1 74535 8dfr 189 1.12e+01 1aoeA c.71.1.1 34895 1ofuA 320 1.12e+01 c.32.1.1 86972 d.79.2.1 86973 1rypI 222 1.17e+01 d.153.1.4 41877 1rz3A 201 1.18e+01 1oafA 261 1.23e+01 a.93.1.1 86734 1ep3B 262 1.25e+01 1ep2B b.43.4.2 25664 c.25.1.3 31554 1qmgA 524 1.28e+01 1qmgA a.100.1.2 18785 c.2.1.6 30182 1fyeA 229 1.29e+01 1fyeA c.23.16.4 31477 1em2A 229 1.38e+01 1em2A d.129.3.2 41321 1b74A 254 1.40e+01 1b74A c.78.2.1 35264 c.78.2.1 35265 2viuA 328 1.44e+01 1hgeA b.19.1.2 23797 1miwA 404 1.60e+01 a.173.1.1 79162 d.218.1.4 79163 1ufkA 254 1.68e+01 1hkhA 279 1.78e+01 1ni9A 338 1.78e+01 e.7.1.2 85739 1hh1A 143 1.83e+01 1gefA c.52.1.18 61036 1bw0A 416 1.84e+01 1bw0A c.67.1.1 34385 1ayl 541 1.85e+01 1ayl c.91.1.1 64718 c.109.1.1 64719 1e3dA 266 1.90e+01 2frvA e.19.1.1 59188 1dhpA 292 1.91e+01 1dhpA c.1.10.1 29097 1cc1S 283 1.92e+01 2frvA e.19.1.1 43313 4uagA 437 1.95e+01 4uagA c.5.1.1 30651 c.59.1.1 33952 c.72.2.1 34955 1l8rA 101 1.98e+01 a.6.1.4 73700 1i6iA 366 1.98e+01 1bg2 c.37.1.9 61844 1dl5A 317 2.00e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1g38A 393 2.02e+01 2admA c.66.1.27 60235 1ii7A 333 2.07e+01 1ii7A d.159.1.4 62415 1kc6A 257 2.07e+01 c.52.1.19 68419 1exrA 148 2.09e+01 1cll a.39.1.5 17299 1mumA 295 2.10e+01 c.1.12.7 85108 1lyxA 248 2.14e+01 c.1.1.1 78304 1bjwA 382 2.16e+01 1bjwA c.67.1.1 34349 1ile 821 2.18e+01 1ile a.27.1.1 16924 b.51.1.1 26889 c.26.1.1 31591 1mj4A 82 2.20e+01 d.120.1.1 79189 1hd7A 318 2.26e+01 1bix d.151.1.1 41780 1jx2B 315 2.33e+01 c.37.1.8 67404 1im5A 180 2.34e+01 c.33.1.2 66211 1ckmA 330 2.34e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1j3bA 529 2.36e+01 c.91.1.1 77071 c.109.1.1 77072 1jflA 228 2.36e+01 c.78.2.1 71656 c.78.2.1 71657 1uj2A 252 2.40e+01 1fm2B 520 2.41e+01 1fm2B 1a8s 273 2.44e+01 1brt c.69.1.12 34710 1qv9A 283 2.45e+01 1ma3A 253 2.49e+01 c.31.1.5 78883 1nszA 347 2.56e+01 b.30.5.4 80724 1i52A 236 2.59e+01 1i52A c.68.1.13 61767 1d7yA 408 2.67e+01 1d7yA c.3.1.5 30565 c.3.1.5 30566 d.87.1.1 40204 1jae 471 2.67e+01 1smd b.71.1.1 27773 c.1.8.1 28760 1n40A 396 2.69e+01 a.104.1.1 79977 1gk9B 557 2.70e+01 1o5xA 248 2.78e+01 1j2rA 199 2.79e+01 1p9aG 290 2.79e+01 c.10.2.7 87990 1cf1A 404 2.85e+01 1cf1A b.1.18.11 21907 b.1.18.11 21908 1otjA 283 2.93e+01 1cg5B 141 2.98e+01 1cg5B a.1.1.2 15585 1broA 277 3.01e+01 1brt c.69.1.12 34700 1b5qA 472 3.06e+01 1b37B c.3.1.2 30404 d.16.1.5 37968 1php 394 3.07e+01 16pk c.86.1.1 35452 1bg6 359 3.08e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1p3dA 475 3.11e+01 c.5.1.1 87728 c.59.1.1 87729 c.72.2.1 87730 1pea 385 3.11e+01 1pea c.93.1.1 35662 1nytA 271 3.12e+01 c.2.1.7 86417 c.58.1.5 86418 1e3aB 560 3.15e+01 1ajqB 1cb0A 283 3.16e+01 1cb0A c.56.2.1 33790 1brt 277 3.20e+01 1brt c.69.1.12 34699 1a8rA 221 3.21e+01 1a8rA d.96.1.1 40587 1khvA 516 3.22e+01 e.8.1.4 68627 1gcqA 61 3.35e+01 1ckaA b.34.2.1 60434 1or0B 528 3.41e+01 1p99A 295 3.46e+01 1qzzA 374 3.50e+01 1jeyA 609 3.50e+01 1jeqA e.31.1.1 62924 1m33A 258 3.54e+01 c.69.1.26 78514 16pk 415 3.69e+01 16pk c.86.1.1 35454 1k6wA 426 3.76e+01 b.92.1.2 68236 c.1.9.5 68237 1pjqA 457 3.76e+01 1v6sA 390 3.80e+01 1nbuA 119 3.89e+01 5nul 138 3.90e+01 5nul c.23.5.1 31191 1pdo 135 3.93e+01 1pdo c.54.1.1 33376 1hlgA 371 3.95e+01 1hlgA c.69.1.6 34656