# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nox 205 2.93e-12 1nox d.90.1.1 40242 1bkjA 240 3.93e-09 1bkjA d.90.1.1 40243 1f5vA 240 5.95e-08 1bkjA d.90.1.1 40255 1icrA 217 6.85e-07 1vfrA d.90.1.1 62274 1necA 216 1.41e-06 1vfrA d.90.1.1 40249 1vfrA 218 4.59e-06 1vfrA d.90.1.1 40247 1jeoA 180 5.40e-01 c.80.1.3 66611 1ei6A 406 9.06e-01 1qklA 127 1.11e+00 1qklA d.78.1.2 39754 1nf2A 268 3.89e+00 1kblA 873 4.26e+00 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1dik 874 4.41e+00 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1n81A 186 4.72e+00 a.185.1.1 85388 1vimA 200 4.82e+00 1khvA 516 6.11e+00 e.8.1.4 68627 1l5jA 865 7.12e+00 a.118.15.1 73592 c.8.2.1 73593 c.83.1.1 73594 2ccyA 128 8.57e+00 2ccyA a.24.3.2 16544 1r6uA 437 9.90e+00 1b8fA 509 1.09e+01 1b8fA a.127.1.2 19434 1gkmA 509 1.10e+01 a.127.1.2 70228 1bxrA 1073 1.19e+01 a.92.1.1 18570 c.24.1.1 31499 c.30.1.1 31697 c.30.1.1 31698 d.142.1.2 41542 d.142.1.2 41543 1keeA 1073 1.19e+01 a.92.1.1 68492 c.24.1.1 68493 c.30.1.1 68494 c.30.1.1 68495 d.142.1.2 68496 d.142.1.2 68497 1c3oA 1073 1.19e+01 1c3oA a.92.1.1 18562 c.24.1.1 31491 c.30.1.1 31681 c.30.1.1 31682 d.142.1.2 41526 d.142.1.2 41527 1a9xA 1058 1.33e+01 a.92.1.1 18550 c.24.1.1 31479 c.30.1.1 31657 c.30.1.1 31658 d.142.1.2 41502 d.142.1.2 41503 1gqeA 365 1.51e+01 e.38.1.1 70351 1f48A 589 1.55e+01 1f48A c.37.1.10 32280 c.37.1.10 32281 1envA 123 1.59e+01 1envA h.3.2.1 45726 1ihuA 589 1.59e+01 c.37.1.10 62394 c.37.1.10 62395 8pchA 220 1.62e+01 1cs8A 1m3sA 186 1.73e+01 c.80.1.3 78573 1igs 248 1.76e+01 1a53 c.1.2.4 28565 1m2oA 768 1.77e+01 a.71.2.1 78480 b.2.8.1 78481 c.62.1.2 78482 d.109.2.1 78483 g.41.10.1 78484 1keeC 1073 1.78e+01 a.92.1.1 68500 c.24.1.1 68501 c.30.1.1 68502 c.30.1.1 68503 d.142.1.2 68504 d.142.1.2 68505 1juk 248 1.79e+01 1a53 c.1.2.4 28567 1uwcA 261 1.83e+01 1c3oC 1073 1.88e+01 a.92.1.1 18563 c.24.1.1 31492 c.30.1.1 31683 c.30.1.1 31684 d.142.1.2 41528 d.142.1.2 41529 1keeG 1073 1.88e+01 a.92.1.1 68516 c.24.1.1 68517 c.30.1.1 68518 c.30.1.1 68519 d.142.1.2 68520 d.142.1.2 68521 1c3oG 1073 2.02e+01 a.92.1.1 18565 c.24.1.1 31494 c.30.1.1 31687 c.30.1.1 31688 d.142.1.2 41532 d.142.1.2 41533 1ftrA 296 2.04e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1a53 247 2.13e+01 1a53 c.1.2.4 28564 1cs0C 1073 2.14e+01 a.92.1.1 18559 c.24.1.1 31488 c.30.1.1 31675 c.30.1.1 31676 d.142.1.2 41520 d.142.1.2 41521 4blmA 265 2.29e+01 1btl e.3.1.1 42721 1jnyA 435 2.30e+01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1uswA 260 2.36e+01 1i12A 160 2.61e+01 1i21A d.108.1.1 61515 1c3oE 1073 2.62e+01 a.92.1.1 18564 c.24.1.1 31493 c.30.1.1 31685 c.30.1.1 31686 d.142.1.2 41530 d.142.1.2 41531 1keeE 1073 2.65e+01 a.92.1.1 68508 c.24.1.1 68509 c.30.1.1 68510 c.30.1.1 68511 d.142.1.2 68512 d.142.1.2 68513 1o5zA 442 2.74e+01 1ld8B 437 2.78e+01 a.102.4.3 73839 1nvvS 481 2.81e+01 a.117.1.1 86279 1jcrB 437 2.82e+01 a.102.4.3 66507 1oi0A 124 2.88e+01 1j6rA 214 2.92e+01 d.173.1.2 71598 1fts 295 2.92e+01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1i1dA 161 2.93e+01 1i21A d.108.1.1 61526 1uw4B 248 2.93e+01 1d8dB 437 2.94e+01 1ft1B a.102.4.3 18866 1pxwA 128 3.01e+01 1hr6A 475 3.15e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1e8gA 560 3.17e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 1m1nA 491 3.24e+01 c.92.2.3 78417 1h6gA 256 3.35e+01 1h6gA a.24.9.1 60669 a.24.9.1 60670 1ft1B 437 3.39e+01 1ft1B a.102.4.3 18867 1iso 416 3.39e+01 1iso c.77.1.1 35065 1i49A 224 3.40e+01 1i49A h.4.7.1 61679 1rfzA 168 3.60e+01 1i21A 159 3.63e+01 1i21A d.108.1.1 61549 1jdbB 1073 3.66e+01 a.92.1.1 18574 c.24.1.1 31503 c.30.1.1 31705 c.30.1.1 31706 d.142.1.2 41550 d.142.1.2 41551 1ghsA 306 3.68e+01 1aq0A c.1.8.3 28840 1i4dA 224 3.83e+01 h.4.7.1 61682 1r6fA 310 3.87e+01 1un8A 552 3.88e+01 1qltA 560 3.93e+01 1qltA d.58.32.1 39457 d.145.1.1 41720