# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1nox	205	4.26e-11	1nox	d.90.1.1	40242
1bkjA	240	4.38e-09	1bkjA	d.90.1.1	40243
1f5vA	240	7.97e-08	1bkjA	d.90.1.1	40255
1icrA	217	6.52e-07	1vfrA	d.90.1.1	62274
1necA	216	1.06e-06	1vfrA	d.90.1.1	40249
1vfrA	218	1.60e-05	1vfrA	d.90.1.1	40247
1kblA	873	8.51e-01		c.1.12.2	68384
				c.8.1.1	68385
				d.142.1.5	68386
1dik	874	1.39e+00	1dik	c.1.12.2	29304
				c.8.1.1	30702
				d.142.1.5	41572
1f5mB	180	7.57e+00	1f5mB	d.110.2.1	40896
1f5mA	180	8.43e+00	1f5mB	d.110.2.1	40895
1exbA	332	1.13e+01	1qrqA	c.1.7.1	28666
1fts	295	1.20e+01	1ng1	a.24.13.1	16968
				c.37.1.10	32279
1uhnA	189	1.23e+01			
1kmdA	117	1.53e+01		d.189.1.1	72744
1pmnA	364	1.69e+01			
1qr0A	228	1.76e+01	1qr0A	d.150.1.1	59038
				d.150.1.1	59039
1nf1A	333	1.89e+01	1nf1A	a.116.1.2	19110
1v1aA	309	1.90e+01			
1jeoA	180	1.92e+01		c.80.1.3	66611
1qrqA	325	1.96e+01	1qrqA	c.1.7.1	28667
1uc7A	125	2.14e+01			
1p32C	209	2.24e+01	1p32A	d.25.1.1	38381
1oi0A	124	2.64e+01			
1d2iA	223	2.66e+01	1d2iA	c.52.1.5	33297
1p32A	209	2.69e+01	1p32A	d.25.1.1	38379
1h6zA	913	2.72e+01		c.1.12.2	70906
				c.8.1.1	70907
				d.142.1.5	70908
1g1sA	162	2.84e+01		d.169.1.1	65100
				g.3.11.1	65101
1prcC	336	2.90e+01	6prcC	a.138.1.2	19674
1sftA	388	2.91e+01	1bd0A	b.49.2.2	26482
				c.1.6.1	28644
1dfmA	223	2.92e+01	1d2iA	c.52.1.5	33295
1eupA	403	2.95e+01	1rom	a.104.1.1	18967
1jipA	403	2.95e+01		a.104.1.1	66748
1aocA	175	3.00e+01	1aocA	g.17.1.5	44817
1jr1A	514	3.04e+01		c.1.5.1	63241
				d.37.1.1	63242
				d.37.1.1	63243
1j5vA	351	3.16e+01		c.72.1.1	71585
1avwB	171	3.24e+01	1wba	b.42.4.1	25599
1avc	673	3.39e+01	1avc	a.65.1.1	18178
				a.65.1.1	18179
1brwA	433	3.44e+01	1brwA	a.46.2.1	17764
				c.27.1.1	31628
				d.41.3.1	38626
1mzgA	146	3.54e+01		d.224.1.1	79696
1bd0A	388	3.63e+01	1bd0A	b.49.2.2	26480
				c.1.6.1	28642
1r9dA	787	3.70e+01			
1ev7B	317	3.82e+01	1ev7B	c.52.1.9	33316