# List of top-scoring protein chains for T0223.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bkjA 240 4.35e-20 1bkjA d.90.1.1 40243 1f5vA 240 4.36e-20 1bkjA d.90.1.1 40255 1nox 205 2.96e-11 1nox d.90.1.1 40242 1kqbA 217 4.78e-06 d.90.1.1 68798 1necA 216 1.32e-05 1vfrA d.90.1.1 40249 1icrA 217 1.69e-05 1vfrA d.90.1.1 62274 1vfrA 218 1.59e-02 1vfrA d.90.1.1 40247 1oaoA 674 9.19e-01 e.26.1.2 86744 1ks8A 433 1.13e+00 a.102.1.2 77519 1brwA 433 1.78e+00 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1n81A 186 1.78e+00 a.185.1.1 85388 1j2pA 246 8.41e+00 d.153.1.4 84022 1gawA 314 1.02e+01 1fnc b.43.4.2 25643 c.25.1.1 31533 1j97A 210 1.15e+01 1f5sA c.108.1.4 62753 1e7vA 960 1.31e+01 1e8xA a.118.1.6 19149 b.7.1.1 23184 d.15.1.5 37632 d.144.1.4 41712 1eqbA 417 1.31e+01 1bj4A c.67.1.4 34484 1e7uA 961 1.32e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1dfoA 417 1.32e+01 1bj4A c.67.1.4 34480 1l7mA 211 1.33e+01 c.108.1.4 73664 1l7pA 211 1.36e+01 c.108.1.4 73670 1vhxA 150 1.45e+01 1e6vC 258 1.50e+01 1mroC d.58.31.1 39439 1qo7A 394 1.50e+01 1qo7A c.69.1.11 34697 1g8pA 350 1.53e+01 1g8pA c.37.1.20 60376 1vizA 240 1.63e+01 1ev7A 317 1.67e+01 1ev7B c.52.1.9 33315 1nijA 318 1.70e+01 c.37.1.10 85741 d.237.1.1 85742 1rg9A 383 1.74e+01 1ikqA 613 1.84e+01 b.29.1.7 66185 d.166.1.1 66186 f.1.5.1 66187 1e6nA 499 1.86e+01 1e15A b.72.2.1 59308 c.1.8.5 59309 d.26.3.1 59310 1nqlA 624 1.91e+01 c.10.2.5 86033 c.10.2.5 86034 g.3.9.1 86035 g.3.9.1 86036 1ikpA 613 2.04e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1gkjA 509 2.06e+01 a.127.1.2 70227 1gkmA 509 2.13e+01 a.127.1.2 70228 1eysM 324 2.19e+01 6prcM f.26.1.1 43516 1gk3A 509 2.19e+01 a.127.1.2 65233 1v9cA 218 2.20e+01 1fts 295 2.27e+01 1ng1 a.24.13.1 16968 c.37.1.10 32279 1avwB 177 2.37e+01 1wba b.42.4.1 25599 1j2qA 237 2.41e+01 d.153.1.4 84029 1p0xA 455 2.50e+01 1rwrA 301 2.51e+01 1eb4A 509 2.55e+01 a.127.1.2 64894 1e5wA 346 2.57e+01 1ef1A a.11.2.1 59280 b.55.1.5 59281 d.15.1.4 59282 1e3iA 376 2.61e+01 2ohxA b.35.1.2 24741 c.2.1.1 29757 1nh6A 540 2.61e+01 b.1.18.2 85713 c.1.8.5 85714 d.26.3.1 85715 1ad5A 437 2.61e+01 1fmk b.34.2.1 24505 d.93.1.1 40491 d.144.1.7 41681 1fdyA 297 2.63e+01 1nal3 c.1.10.1 29071 1e3lA 376 2.66e+01 2ohxA b.35.1.2 24745 c.2.1.1 29761 1ou0A 207 2.70e+01 1ef1A 294 2.71e+01 1ef1A a.11.2.1 16368 b.55.1.5 27003 d.15.1.4 37611 1gk2A 509 2.74e+01 a.127.1.2 65229 1hl2A 297 2.80e+01 c.1.10.1 83581 1nal1 297 2.84e+01 1nal3 1otjA 283 2.94e+01 1smiA 471 3.03e+01 1lc5A 364 3.03e+01 c.67.1.1 73827 1fahA 471 3.16e+01 1bu7A a.104.1.1 18945 1bu7A 455 3.25e+01 1bu7A a.104.1.1 18937 1eb7A 323 3.30e+01 1eb7A a.3.1.5 59404 a.3.1.5 59405 1s1iB 253 3.34e+01 1bvyA 458 3.40e+01 1bu7A a.104.1.1 18943 1poy1 323 3.41e+01 1pot 1ivoA 622 3.45e+01 c.10.2.5 76845 c.10.2.5 76846 g.3.9.1 76847 g.3.9.1 76848 1pot 325 3.48e+01 1pot c.94.1.1 35807 1bxbA 387 3.54e+01 4xis c.1.15.3 29543 2hpdA 471 3.54e+01 1bu7A a.104.1.1 18939 1he8A 965 3.55e+01 1e8xA a.118.1.6 19154 b.7.1.1 23189 d.15.1.5 37637 d.144.1.4 41717 1jpzA 473 3.58e+01 a.104.1.1 67069 1p0wA 455 3.71e+01 1e8yA 966 3.79e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1ex1A 605 3.84e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1sbsH 222 3.86e+01 1igtB b.1.1.1 20367 b.1.1.2 21359 1m7jA 484 3.90e+01 b.92.1.6 78732 b.92.1.6 78733 c.1.9.11 78734 1ii8B 174 3.96e+01 1f2tB