# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bkjA 240 4.22e-24 1bkjA d.90.1.1 40243 1f5vA 240 1.36e-23 1bkjA d.90.1.1 40255 1nox 205 7.96e-15 1nox d.90.1.1 40242 1icrA 217 3.39e-08 1vfrA d.90.1.1 62274 1vfrA 218 1.43e-04 1vfrA d.90.1.1 40247 1fts 295 3.99e-02 1ng1 a.24.13.1 16968 c.37.1.10 32279 1gqeA 365 1.23e-01 e.38.1.1 70351 1qo7A 394 1.80e-01 1qo7A c.69.1.11 34697 1qyaA 307 2.71e-01 1ig8A 486 2.82e-01 2yhx c.55.1.3 64746 c.55.1.3 64747 1vk3A 615 2.88e-01 1n81A 186 3.46e-01 a.185.1.1 85388 1v8gA 329 3.67e-01 1qs0A 407 4.56e-01 1qs0A c.36.1.11 31829 1jnyA 435 6.48e-01 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1uanA 227 8.52e-01 1sdjA 310 9.40e-01 1gkmA 509 1.02e+00 a.127.1.2 70228 1b8fA 509 1.07e+00 1b8fA a.127.1.2 19434 1i19A 561 1.53e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 1dozA 309 1.87e+00 1ak1 c.92.1.1 35592 1kqzA 273 2.30e+00 c.1.8.5 68844 1e4iA 447 2.35e+00 1e70M c.1.8.4 59225 2hvm 273 2.82e+00 1cnv c.1.8.5 28985 1m1nB 522 3.72e+00 c.92.2.3 78418 1f5aA 513 3.78e+00 1fa0B a.160.1.1 75835 d.218.1.3 75836 d.58.16.1 39337 1ks8A 433 4.13e+00 a.102.1.2 77519 1nijA 318 4.30e+00 c.37.1.10 85741 d.237.1.1 85742 1dqaA 467 4.56e+00 1dqaA d.58.20.1 39364 d.179.1.1 42585 1pb1A 416 4.68e+00 c.77.1.1 88014 1oaoA 674 4.69e+00 e.26.1.2 86744 1vizA 240 5.07e+00 1utcA 363 5.37e+00 1kwgA 645 5.41e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1fsu 492 5.58e+00 1auk c.76.1.2 35032 1g8fA 511 6.26e+00 1g8fA b.122.1.3 60348 c.26.1.5 60349 c.37.1.15 60350 1iuqA 367 6.34e+00 1l2uA 245 6.40e+00 c.1.2.3 73516 1k0rA 366 6.66e+00 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1j0aA 325 6.77e+00 c.79.1.1 83871 1bgc 174 6.90e+00 1bgc a.26.1.1 16822 1m1nA 491 7.28e+00 c.92.2.3 78417 1k30A 368 7.87e+00 c.112.1.1 68067 1s9rA 410 8.10e+00 1ojxA 263 8.25e+00 1ejxC 567 9.10e+00 b.92.1.1 83184 c.1.9.2 83185 1jkmB 361 9.14e+00 1jkmA c.69.1.2 34634 1fobA 334 9.26e+00 c.1.8.3 83255 1brwA 433 9.49e+00 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1ufoA 238 9.87e+00 1vhsA 175 1.02e+01 1f75A 249 1.09e+01 1f75A c.101.1.1 59662 1ld8B 437 1.09e+01 a.102.4.3 73839 1k3eA 156 1.12e+01 d.198.1.1 68103 1dosA 358 1.14e+01 1dosA c.1.10.2 29175 1ea7A 310 1.18e+01 c.41.1.1 70086 1fc6A 388 1.22e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1m98A 317 1.22e+01 a.175.1.1 78866 d.17.4.6 78867 1aq0A 306 1.30e+01 1aq0A c.1.8.3 28842 1j5sA 463 1.30e+01 c.1.9.8 71580 1uwsA 489 1.31e+01 1bw0A 416 1.41e+01 1bw0A c.67.1.1 34385 1hxhA 253 1.43e+01 c.2.1.2 76725 1qusA 322 1.44e+01 1ltm d.2.1.6 36991 1q45A 391 1.47e+01 1h2wA 710 1.47e+01 b.69.7.1 76596 c.69.1.4 76597 1edg 380 1.47e+01 1edg c.1.8.3 28807 1qfmA 710 1.48e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1dd9A 338 1.52e+01 1dd9A e.13.1.1 43254 2apr 325 1.54e+01 2er7E b.50.1.2 26819 1gowA 489 1.59e+01 1qvbA c.1.8.4 28981 3aprE 325 1.59e+01 2er7E b.50.1.2 26820 1e5dA 402 1.66e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1g5cA 170 1.80e+01 1g5cA c.53.2.1 60264 1efyA 350 1.81e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1hcl 298 1.87e+01 1hcl d.144.1.7 41593 1moq 368 1.93e+01 1moq c.80.1.1 35302 1q7lA 198 1.95e+01 1nnvA 110 1.99e+01 1pmd 675 2.04e+01 1pmd d.11.1.1 37491 d.11.1.1 37492 d.175.1.1 42562 e.3.1.1 42771 1ru8A 232 2.10e+01 1bpoA 494 2.11e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1h09A 338 2.12e+01 b.109.1.1 83420 c.1.8.8 83421 1ayl 541 2.14e+01 1ayl c.91.1.1 64718 c.109.1.1 64719 1p3wA 404 2.15e+01 c.67.1.3 87752 1o17A 345 2.25e+01 a.46.2.1 80765 c.27.1.1 80766 1edt 271 2.26e+01 2ebn c.1.8.5 28993 1hkeA 137 2.35e+01 d.233.1.1 83549 1uuzA 137 2.35e+01 1nulA 152 2.46e+01 1nulA c.61.1.1 34011 2pfkA 320 2.47e+01 3pfk c.89.1.1 35577 1j9yA 385 2.59e+01 1j9yA c.1.8.3 62791 1f0kA 364 2.63e+01 1f0kA c.87.1.2 35465 1mroC 247 2.72e+01 1mroC d.58.31.1 39437 1hbnC 248 2.72e+01 1mroC d.58.31.1 60902 1ng4A 390 2.79e+01 c.3.1.2 85666 d.16.1.3 85667 1j9bA 141 2.83e+01 c.47.1.12 66459 1jpmA 366 2.84e+01 c.1.11.2 67031 d.54.1.1 67032 1ekjA 221 2.85e+01 1ekjB c.53.2.1 33364 1r9lA 309 2.90e+01 1ov9A 50 2.92e+01 1oc7A 364 2.94e+01 c.6.1.1 86794 1uhvA 500 2.94e+01 1on3A 523 2.96e+01 c.14.1.4 87107 c.14.1.4 87108 1v7rA 186 3.00e+01 1o8bA 219 3.00e+01 c.35.1.2 81180 d.58.40.1 81181 1eudA 311 3.08e+01 2scuA c.2.1.8 30312 c.23.4.1 31140 1jeyB 565 3.09e+01 1jeqB e.31.1.2 62925 1v0wA 506 3.10e+01 1mpxA 615 3.12e+01 b.18.1.13 85041 c.69.1.21 85042 1pvtA 238 3.12e+01 1scuA 288 3.13e+01 2scuA c.2.1.8 30307 c.23.4.1 31135 1f0iA 504 3.19e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 7taa 478 3.37e+01 7taa b.71.1.1 27778 c.1.8.1 28765 1jm1A 204 3.39e+01 b.33.1.1 71745 1i50A 1733 3.52e+01 e.29.1.1 61754 1jv1A 505 3.56e+01 c.68.1.5 71892 1ksiA 642 3.57e+01 1ksiB b.30.2.1 24408 d.17.2.1 38043 d.17.2.1 38044 1liiA 363 3.68e+01 c.72.1.1 73921 1dbtA 239 3.71e+01 1dbtA c.1.2.3 28539 1pinA 163 3.73e+01 1pinA b.72.1.1 27802 d.26.1.1 38431 1ikpA 613 3.74e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1vrtA 560 3.82e+01 1rthA c.55.3.1 33574 e.8.1.2 43023 1sdsA 117 3.83e+01 1a7j 290 3.84e+01 1a7j c.37.1.6 31952 1odoA 408 3.85e+01 2bvwA 362 3.85e+01 1bvwA c.6.1.1 30666 1d8dB 437 3.89e+01 1ft1B a.102.4.3 18866 1f3mC 297 3.94e+01 1hcl d.144.1.7 41677 1dfoA 417 3.97e+01 1bj4A c.67.1.4 34480