# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bkjA 240 2.35e-22 1bkjA d.90.1.1 40243 1f5vA 240 2.90e-22 1bkjA d.90.1.1 40255 1nox 205 4.54e-14 1nox d.90.1.1 40242 1icrA 217 1.13e-08 1vfrA d.90.1.1 62274 1vfrA 218 1.92e-04 1vfrA d.90.1.1 40247 1n81A 186 2.25e-02 a.185.1.1 85388 1fts 295 9.31e-02 1ng1 a.24.13.1 16968 c.37.1.10 32279 1vizA 240 1.98e-01 c.1.4.1 -5212 1f3mC 297 5.83e-01 1hcl d.144.1.7 41677 1qo7A 394 6.26e-01 1qo7A c.69.1.11 34697 1d0qA 103 8.30e-01 1d0qA g.41.3.2 45208 1gz8A 299 1.57e+00 d.144.1.7 83405 1hcl 298 1.97e+00 1hcl d.144.1.7 41593 1ig8A 486 2.56e+00 2yhx c.55.1.3 64746 c.55.1.3 64747 1ojxA 263 2.58e+00 c.1.10.1 -5445 1g8iA 190 4.68e+00 1rec a.39.1.5 60363 1dozA 309 4.86e+00 1ak1 c.92.1.1 35592 1brwA 433 4.90e+00 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1d3yA 301 5.25e+00 1d3yA e.12.1.1 43252 1e7uA 961 5.43e+00 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1g8pA 350 5.44e+00 1g8pA c.37.1.20 60376 1eb7A 323 5.47e+00 1eb7A a.3.1.5 59404 a.3.1.5 59405 1ks8A 433 5.66e+00 a.102.1.2 77519 1j0aA 325 6.79e+00 c.79.1.1 83871 1fmjA 351 7.06e+00 c.37.1.5 59879 1e8yA 966 8.06e+00 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1qr0A 228 8.32e+00 1qr0A d.150.1.1 59038 d.150.1.1 59039 1jjyA 636 9.53e+00 1jjyA 1gp6A 356 9.63e+00 b.82.2.1 65441 1phnB 172 9.68e+00 1qgwC a.1.1.3 15642 1bgc 174 1.01e+01 1bgc a.26.1.1 16822 1r9dA 787 1.02e+01 1adoA 363 1.10e+01 1fbaA c.1.10.1 29124 1su8A 636 1.27e+01 e.26.1.2 -12015 1qxyA 252 1.28e+01 d.127.1.1 -10993 2hhmA 276 1.34e+01 1imbA e.7.1.1 42955 1kblA 873 1.41e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1cpcB 172 1.49e+01 1qgwC a.1.1.3 15644 1fo3A 460 1.50e+01 1dl2A a.102.2.1 18845 1l7mA 211 1.50e+01 c.108.1.4 73664 1gtmA 419 1.54e+01 1hwyA c.2.1.7 30223 c.58.1.1 33871 1gqeA 365 1.57e+01 e.38.1.1 70351 1hl9A 449 1.63e+01 unknown_sccs -4694 unknown_sccs -5365 1wdcB 156 1.68e+01 1wdcB a.39.1.5 17302 1dik 874 1.71e+01 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1i50A 1733 1.73e+01 e.29.1.2 61754 1f5aA 513 1.78e+01 1fa0B a.160.1.1 75835 d.218.1.3 75836 d.58.16.1 39337 1fsz 372 1.85e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1j97A 211 1.85e+01 1f5sA c.108.1.4 62753 1vrtA 560 1.92e+01 1rthA c.55.3.1 33574 e.8.1.2 43023 1sv6A 269 2.02e+01 1sdsA 117 2.04e+01 1gowA 489 2.08e+01 1qvbA c.1.8.4 28981 1q4rA 112 2.11e+01 d.58.4.4 -9943 1uwsA 489 2.15e+01 1r5tA 142 2.17e+01 1oaoA 674 2.24e+01 e.26.1.2 86744 1cb8A 678 2.27e+01 1cb8A a.102.3.2 18849 b.24.1.1 23898 b.30.5.2 24422 1k3eA 156 2.28e+01 d.198.1.1 68103 1ie9A 259 2.29e+01 1db1A a.123.1.1 62318 1wdcC 156 2.31e+01 1wdcC a.39.1.5 17317 1db1A 259 2.33e+01 1db1A a.123.1.1 19329 1rthA 560 2.35e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1otjA 283 2.42e+01 b.82.2.5 -4893 1aocA 175 2.55e+01 1aocA g.17.1.5 44817 1d02A 202 2.56e+01 1d02A c.52.1.8 33313 1p7gA 222 2.57e+01 a.2.11.1 -108 d.44.1.1 -9742 1kqzA 273 2.60e+01 c.1.8.5 68844 1hrdA 449 2.67e+01 1k89 c.2.1.7 30219 c.58.1.1 33867 1aihA 170 2.70e+01 1aihA d.163.1.1 42149 1mumA 295 2.71e+01 c.1.12.7 85108 1imbA 277 2.74e+01 1imbA e.7.1.1 42957 1ufkA 254 2.76e+01 unknown_sccs -8103 1f0kA 364 2.78e+01 1f0kA c.87.1.2 35465 1id1A 153 2.81e+01 1id1A c.2.1.9 62286 1epuA 591 2.85e+01 1dn1A e.25.1.1 43358 1jmxA 494 2.91e+01 a.3.1.7 66901 a.3.1.7 66902 b.1.18.14 66903 b.1.18.14 66904 b.61.4.1 66905 1v58A 241 2.93e+01 1v1rA 400 2.93e+01 1fo1A 271 2.96e+01 1fo1A c.10.2.3 30869 d.58.7.2 39213 1ov9A 50 3.02e+01 a.155.1.1 -1486 1kb9D 246 3.09e+01 a.3.1.3 77317 f.23.11.1 77318 1qo3C 137 3.25e+01 1qo3C d.169.1.1 42350 1g71A 347 3.31e+01 1g71A unknown_sccs 43268 1mx3A 347 3.40e+01 c.2.1.4 79638 c.23.12.1 79639 1a8d 452 3.46e+01 1a8d b.29.1.6 24262 b.42.4.2 25607 1kl7A 514 3.46e+01 c.79.1.1 72678 1q7zA 566 3.47e+01 c.1.21.2 -5638 c.1.26.1 -5666 1agi 125 3.49e+01 7rsa d.5.1.1 37303 1n3kA 130 3.53e+01 a.77.1.4 79965 1n7kA 234 3.55e+01 c.1.10.1 85374 1ppjH 78 3.60e+01 1k30A 368 3.66e+01 c.112.1.1 68067 1ezvD 245 3.84e+01 1be3D a.3.1.3 59546 f.23.11.1 59547 1ut9A 609 3.90e+01 a.102.1.2 -1326 b.1.18.2 -2710 1a6o 332 3.93e+01 1a6o