# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bkjA 240 1.50e-23 1bkjA d.90.1.1 40243 1f5vA 240 2.27e-23 1bkjA d.90.1.1 40255 1nox 205 7.87e-15 1nox d.90.1.1 40242 1icrA 217 9.96e-09 1vfrA d.90.1.1 62274 1vfrA 218 5.05e-05 1vfrA d.90.1.1 40247 1dozA 309 1.27e-01 1ak1 c.92.1.1 35592 1n81A 186 1.48e-01 a.185.1.1 85388 1vk3A 615 2.07e-01 1qs0A 407 7.69e-01 1qs0A c.36.1.11 31829 1uanA 227 8.87e-01 1oaoA 674 9.74e-01 e.26.1.2 86744 1gqeA 365 9.93e-01 e.38.1.1 70351 1qyaA 307 1.09e+00 1gkmA 509 1.20e+00 a.127.1.2 70228 1b8fA 509 1.20e+00 1b8fA a.127.1.2 19434 1sdjA 310 1.23e+00 1jnyA 435 1.24e+00 b.43.3.1 66982 b.44.1.1 66983 c.37.1.8 66984 1fts 295 1.30e+00 1ng1 a.24.13.1 16968 c.37.1.10 32279 1ig8A 486 1.38e+00 2yhx c.55.1.3 64746 c.55.1.3 64747 1ks8A 433 1.39e+00 a.102.1.2 77519 1qo7A 394 1.39e+00 1qo7A c.69.1.11 34697 1gowA 489 1.62e+00 1qvbA c.1.8.4 28981 1qmeA 702 2.51e+00 1pmd d.11.1.1 37487 d.11.1.1 37488 d.175.1.1 42560 e.3.1.1 42769 1brwA 433 2.62e+00 1brwA a.46.2.1 17764 c.27.1.1 31628 d.41.3.1 38626 1aq0A 306 2.84e+00 1aq0A c.1.8.3 28842 1ru8A 232 2.88e+00 1lzlA 323 3.32e+00 c.69.1.2 78306 1l2uA 245 3.70e+00 c.1.2.3 73516 1ei6A 406 4.24e+00 1nijA 318 4.91e+00 c.37.1.10 85741 d.237.1.1 85742 1i19A 561 5.17e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 1vizA 240 5.40e+00 1uwsA 489 5.42e+00 1pmd 675 5.47e+00 1pmd d.11.1.1 37491 d.11.1.1 37492 d.175.1.1 42562 e.3.1.1 42771 1kjqA 391 5.48e+00 b.84.2.1 72616 c.30.1.1 72617 d.142.1.2 72618 1bgc 174 5.96e+00 1bgc a.26.1.1 16822 1j0aA 325 6.28e+00 c.79.1.1 83871 1kwgA 645 6.71e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1k0rA 366 9.01e+00 b.40.4.5 67961 d.52.3.1 67962 d.52.3.1 67963 d.202.1.1 67964 1m1nB 522 9.34e+00 c.92.2.3 78418 1jkmB 361 9.73e+00 1jkmA c.69.1.2 34634 1m5wA 243 9.92e+00 c.1.24.1 84836 1nx8A 273 1.02e+01 b.82.2.8 86374 1bykA 255 1.03e+01 1bykA c.93.1.1 35706 1ufoA 238 1.11e+01 1ccwB 483 1.27e+01 1cb7B c.1.19.2 29646 1g8iA 190 1.39e+01 1rec a.39.1.5 60363 1ho1A 242 1.47e+01 1ho1A c.1.24.1 61097 1pbgA 468 1.48e+01 1e70M c.1.8.4 28946 1ld8B 437 1.51e+01 a.102.4.3 73839 1nlnA 204 1.52e+01 1vhsA 175 1.53e+01 1mumA 295 1.53e+01 c.1.12.7 85108 1ojxA 263 1.55e+01 1utcA 363 1.56e+01 1pii 452 1.61e+01 1pii c.1.2.4 28559 c.1.2.4 28563 1dqaA 467 1.62e+01 1dqaA d.58.20.1 39364 d.179.1.1 42585 1gnxA 479 1.62e+01 c.1.8.4 76241 1dfoA 417 1.65e+01 1bj4A c.67.1.4 34480 1fsz 372 1.72e+01 1fsz c.32.1.1 31750 d.79.2.1 39802 1eyzA 392 1.72e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1hcl 298 1.73e+01 1hcl d.144.1.7 41593 1ejxC 567 1.75e+01 b.92.1.1 83184 c.1.9.2 83185 1dosA 358 1.94e+01 1dosA c.1.10.2 29175 1h2wA 710 2.02e+01 b.69.7.1 76596 c.69.1.4 76597 1qfmA 710 2.02e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1e4iA 447 2.06e+01 1e70M c.1.8.4 59225 1q7lA 198 2.12e+01 1avpA 204 2.17e+01 1avpA d.3.1.7 37132 1rg9A 383 2.19e+01 1yal 218 2.21e+01 1cs8A d.3.1.1 37025 1e55A 512 2.23e+01 1e70M c.1.8.4 28934 2masA 314 2.26e+01 2masA c.70.1.1 34810 1nnvA 110 2.26e+01 1e5dA 402 2.28e+01 1e5dA c.23.5.1 31208 d.157.1.3 42061 1h49A 512 2.29e+01 c.1.8.4 83477 1v7rA 186 2.32e+01 1d8dB 437 2.38e+01 1ft1B a.102.4.3 18866 1k3eA 156 2.38e+01 d.198.1.1 68103 1fo8A 343 2.43e+01 1foaA c.68.1.10 59927 1edg 380 2.59e+01 1edg c.1.8.3 28807 1hdoA 206 2.62e+01 1he2A c.2.1.2 60965 1ayl 541 2.63e+01 1ayl c.91.1.1 64718 c.109.1.1 64719 1s9rA 410 2.64e+01 1fsu 492 2.70e+01 1auk c.76.1.2 35032 1q74A 303 2.73e+01 1gp6A 356 2.74e+01 b.82.2.1 65441 1f5aA 513 2.83e+01 1fa0B a.160.1.1 75835 d.218.1.3 75836 d.58.16.1 39337 1iso 416 2.86e+01 1iso c.77.1.1 35065 2tpsA 227 2.90e+01 2tpsA c.1.3.1 28591 1uroA 367 2.99e+01 1uroA c.1.22.1 29675 2fokA 579 3.00e+01 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1a7j 290 3.00e+01 1a7j c.37.1.6 31952 1bw0A 416 3.15e+01 1bw0A c.67.1.1 34385 1oi2A 366 3.15e+01 c.32.1.2 87039 d.79.2.2 87040 1vjzA 341 3.15e+01 1ea7A 310 3.21e+01 c.41.1.1 70086 1vimA 200 3.25e+01 1f3mC 297 3.26e+01 1hcl d.144.1.7 41677 1v8gA 329 3.26e+01 1f0iA 504 3.29e+01 1f0iA d.136.1.2 59566 d.136.1.2 59567 1or7C 90 3.34e+01 a.180.1.1 87336 1gz8A 299 3.40e+01 d.144.1.7 83405 1o8bA 219 3.41e+01 c.35.1.2 81180 d.58.40.1 81181 1p3wA 404 3.42e+01 c.67.1.3 87752 1qusA 322 3.53e+01 1ltm d.2.1.6 36991 1uumA 372 3.55e+01 1f0kA 364 3.55e+01 1f0kA c.87.1.2 35465 1n0wA 243 3.63e+01 c.37.1.11 79772 2hvm 273 3.64e+01 1cnv c.1.8.5 28985 1v0wA 506 3.70e+01 1edt 271 3.72e+01 2ebn c.1.8.5 28993 1r3sA 367 3.74e+01 1dv1A 449 3.77e+01 1bncA b.84.2.1 28234 c.30.1.1 31641 d.142.1.2 41486 1ekjA 221 3.91e+01 1ekjB c.53.2.1 33364 1ikpA 613 3.95e+01 b.29.1.7 66182 d.166.1.1 66183 f.1.5.1 66184 1mpxA 615 3.96e+01 b.18.1.13 85041 c.69.1.21 85042 1o0uA 429 3.96e+01 c.118.1.1 80743