# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1bkjA	240	2.09e-19	1bkjA	d.90.1.1	40243
1f5vA	240	2.25e-19	1bkjA	d.90.1.1	40255
1nox	205	9.09e-12	1nox	d.90.1.1	40242
1icrA	217	8.68e-06	1vfrA	d.90.1.1	62274
1vfrA	218	1.57e-02	1vfrA	d.90.1.1	40247
1g8pA	350	1.11e+00	1g8pA	c.37.1.20	60376
1hcl	298	2.44e+00	1hcl	d.144.1.7	41593
1ks8A	433	3.78e+00		a.102.1.2	77519
1qo7A	394	4.10e+00	1qo7A	c.69.1.11	34697
1gz8A	299	5.96e+00		d.144.1.7	83405
1brwA	433	6.06e+00	1brwA	a.46.2.1	17764
				c.27.1.1	31628
				d.41.3.1	38626
1f3mC	297	7.36e+00	1hcl	d.144.1.7	41677
1ojxA	263	1.04e+01			
1n81A	186	1.11e+01		a.185.1.1	85388
1r2fA	319	1.32e+01	1r2fA	a.25.1.2	16800
1fts	295	1.34e+01	1ng1	a.24.13.1	16968
				c.37.1.10	32279
1dkuA	317	1.34e+01	1dkuA	c.61.1.2	34118
				c.61.1.2	34119
1vizA	240	1.40e+01			
1ig8A	486	1.43e+01	2yhx	c.55.1.3	64746
				c.55.1.3	64747
1gqeA	365	1.63e+01		e.38.1.1	70351
1j2rA	199	1.94e+01			
1d0qA	103	2.19e+01	1d0qA	g.41.3.2	45208
1mpxA	615	3.01e+01		b.18.1.13	85041
				c.69.1.21	85042
1blxA	326	3.34e+01	1hcl	d.144.1.7	41596
1g5cA	170	3.51e+01	1g5cA	c.53.2.1	60264
1e7uA	961	3.55e+01	1e8xA	a.118.1.6	19147
				b.7.1.1	23182
				d.15.1.5	37630
				d.144.1.4	41710
1j0aA	325	3.55e+01		c.79.1.1	83871
2hhmA	276	3.72e+01	1imbA	e.7.1.1	42955
1m2eA	135	3.87e+01		c.23.1.5	78478
1om1A	332	3.88e+01			
1g8iA	190	3.89e+01	1rec	a.39.1.5	60363