PFRMAT RR
TARGET T0222
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
MAAFQIANKTVGKDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVK
FQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCRE
KQVIFLSTVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMI
FSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPML
AAAFPEAVIGFSDHSEHPTEAPCAAVRLGAKLIEKHFTIDKNLPGADHSF
ALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLGSSYKTTTAIEGEIRN
FAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGLHPRFFELLTSGVRAV
RDIPADTGIVWDDILLKDSPFHE
130 210 0 8 0.442
130 230 0 8 0.404
180 210 0 8 0.401
130 181 0 8 0.384
130 180 0 8 0.381
211 230 0 8 0.378
181 210 0 8 0.367
38 210 0 8 0.364
108 210 0 8 0.347
41 130 0 8 0.347
127 210 0 8 0.342
38 130 0 8 0.339
37 235 0 8 0.337
25 53 0 8 0.334
108 130 0 8 0.329
27 210 0 8 0.326
27 130 0 8 0.323
27 132 0 8 0.316
34 252 0 8 0.313
180 230 0 8 0.31
139 212 0 8 0.31
27 108 0 8 0.31
27 38 0 8 0.308
108 127 0 8 0.305
152 181 0 8 0.3
150 180 0 8 0.298
84 250 0 8 0.295
222 260 0 8 0.293
210 230 0 8 0.293
230 264 0 8 0.29
181 230 0 8 0.29
152 180 0 8 0.29
132 181 0 8 0.29
108 193 0 8 0.29
25 250 0 8 0.29
25 84 0 8 0.29
127 180 0 8 0.288
177 232 0 8 0.283
152 210 0 8 0.283
51 196 0 8 0.283
98 181 0 8 0.28
25 106 0 8 0.28
179 230 0 8 0.278
41 181 0 8 0.278
40 188 0 8 0.278
29 210 0 8 0.278
25 77 0 8 0.278
24 135 0 8 0.278
27 180 0 8 0.276
25 107 0 8 0.276
130 152 0 8 0.273
108 181 0 8 0.273
108 180 0 8 0.273
126 230 0 8 0.271
53 107 0 8 0.271
25 81 0 8 0.271
153 230 0 8 0.266
81 211 0 8 0.266
25 54 0 8 0.266
22 177 0 8 0.266
19 212 0 8 0.264
21 139 0 8 0.261
130 153 0 8 0.259
179 210 0 8 0.257
139 225 0 8 0.257
41 230 0 8 0.257
25 67 0 8 0.257
23 135 0 8 0.257
212 232 0 8 0.255
72 84 0 8 0.255
24 126 0 8 0.255
24 84 0 8 0.255
20 38 0 8 0.255
18 126 0 8 0.255
48 177 0 8 0.252
25 108 0 8 0.252
179 211 0 8 0.25
179 193 0 8 0.25
77 302 0 8 0.25
27 152 0 8 0.25
23 207 0 8 0.25
211 226 0 8 0.248
142 335 0 8 0.248
90 250 0 8 0.248
27 181 0 8 0.248
27 41 0 8 0.248
25 230 0 8 0.248
211 250 0 8 0.246
211 221 0 8 0.246
210 232 0 8 0.246
131 192 0 8 0.246
126 180 0 8 0.246
51 139 0 8 0.246
25 180 0 8 0.246
19 135 0 8 0.246
180 211 0 8 0.243
108 152 0 8 0.243
51 211 0 8 0.243
41 50 0 8 0.243
25 126 0 8 0.243
24 211 0 8 0.243
208 324 0 8 0.241
132 180 0 8 0.241
51 261 0 8 0.241
25 210 0 8 0.241
106 135 0 8 0.239
81 250 0 8 0.239
54 81 0 8 0.239
37 180 0 8 0.239
25 131 0 8 0.239
126 210 0 8 0.237
25 37 0 8 0.237
211 228 0 8 0.235
126 211 0 8 0.235
108 230 0 8 0.235
54 77 0 8 0.235
41 179 0 8 0.235
41 126 0 8 0.235
37 209 0 8 0.235
27 230 0 8 0.235
26 230 0 8 0.235
25 193 0 8 0.235
25 125 0 8 0.235
25 90 0 8 0.235
25 50 0 8 0.235
107 180 0 8 0.232
51 84 0 8 0.232
38 230 0 8 0.232
29 180 0 8 0.232
25 211 0 8 0.232
25 72 0 8 0.232
127 230 0 8 0.23
80 211 0 8 0.23
53 110 0 8 0.23
41 180 0 8 0.23
38 108 0 8 0.23
26 126 0 8 0.23
25 80 0 8 0.23
25 66 0 8 0.23
25 55 0 8 0.23
18 115 0 8 0.23
18 112 0 8 0.23
18 111 0 8 0.23
307 326 0 8 0.228
208 336 0 8 0.228
142 339 0 8 0.228
130 179 0 8 0.228
129 210 0 8 0.228
112 231 0 8 0.228
53 106 0 8 0.228
41 210 0 8 0.228
37 211 0 8 0.228
27 114 0 8 0.228
26 180 0 8 0.228
24 129 0 8 0.228
24 77 0 8 0.228
131 250 0 8 0.226
127 139 0 8 0.226
91 107 0 8 0.226
77 250 0 8 0.226
67 84 0 8 0.226
53 71 0 8 0.226
41 231 0 8 0.226
41 127 0 8 0.226
29 130 0 8 0.226
26 210 0 8 0.226
26 179 0 8 0.226
153 210 0 8 0.224
139 181 0 8 0.224
126 181 0 8 0.224
125 211 0 8 0.224
108 232 0 8 0.224
80 107 0 8 0.224
71 84 0 8 0.224
53 77 0 8 0.224
49 133 0 8 0.224
25 135 0 8 0.224
25 130 0 8 0.224
24 131 0 8 0.224
24 55 0 8 0.224
20 205 0 8 0.224
181 211 0 8 0.222
130 211 0 8 0.222
108 179 0 8 0.222
107 210 0 8 0.222
107 118 0 8 0.222
END