CreatePredAlphaCost pred_alpha2k alpha11 T0222.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0222.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 5 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 20  \
	pred_alpha2k 5 \
	pred_alpha04 1 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.
#from  T0222.t2k.dssp-ehl2.constraints
HelixConstraint 	I275	L283	0.6261
HelixConstraint 	A293	R304	0.6309
StrandConstraint	A324	L326	0.7212
HelixConstraint 	R338	T344	0.7006


# from decoys/align1.sheets
SheetConstraint G305 T309	L326 N322	hbond G305	5.0
SheetConstraint P311 Q313	P354 D352	hbond I312	5.0