# List of top-scoring protein chains for t2k-100-30-bys hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ucsA 64 1.82e-03 b.85.1.1 88466 1msi 70 3.06e-03 1msi b.85.1.1 28281 1c89A 134 4.61e-03 1msi b.85.1.1 28314 b.85.1.1 28315 1hg7A 66 1.94e-02 1msi b.85.1.1 28280 1ml9A 302 8.15e-01 b.85.7.1 79282 1amx 180 8.50e-01 1amx b.2.3.1 22410 1vjeA 166 9.35e-01 d.185.1.2 -10261 1el6B 219 1.19e+00 1el6B d.182.1.1 42607 1s5pA 235 1.25e+00 c.31.1.5 -6774 1emvB 134 1.56e+00 1bxiB d.4.1.1 37135 1nnt 328 1.62e+00 1nnt c.94.1.2 35884 1el6A 219 1.73e+00 1el6B d.182.1.1 42606 1innA 166 2.00e+00 1j98A d.185.1.2 62608 1bxiB 134 2.34e+00 1bxiB d.4.1.1 37136 1fr2B 134 2.44e+00 d.4.1.1 83257 1iejA 332 2.76e+00 1nnt c.94.1.2 62328 1nftA 329 2.86e+00 1nnt c.94.1.2 35881 1fiuA 286 3.16e+00 1fiuA c.52.1.10 33317 1fwrA 213 3.58e+00 1fwrA c.1.10.1 29164 1e6cA 173 3.59e+00 1shkA c.37.1.2 59296 1i8nA 126 3.68e+00 1i8nA g.10.1.2 61976 1rl2A 137 4.93e+00 1rl2A b.34.5.3 24610 b.40.4.5 25342 1p5hA 428 5.21e+00 c.123.1.1 87802 1oh0A 131 5.42e+00 d.17.4.3 87004 1p8xA 344 5.51e+00 d.109.1.1 -10813 d.109.1.1 -10814 d.109.1.1 -10815 1qmpA 130 5.54e+00 1dz3A c.23.1.1 31106 1euaA 213 5.58e+00 1fwrA c.1.10.1 29155 1go4A 205 5.65e+00 d.135.1.1 70292 1fq0A 213 6.04e+00 1fwrA c.1.10.1 29161 1oahA 519 6.12e+00 a.138.1.3 86736 1n9lA 109 6.48e+00 d.110.3.6 85468 1wdcC 156 6.89e+00 1wdcC a.39.1.5 17317 1ugiA 84 6.91e+00 1ugiA d.17.5.1 38125 1opy 131 7.20e+00 1opy d.17.4.3 38113 1tfaA 329 7.53e+00 1nnt c.94.1.2 35880 1ssn 136 7.61e+00 2sak d.15.5.1 37720 1ughI 82 8.57e+00 1ugiA d.17.5.1 38133 1udiI 83 8.88e+00 1ugiA d.17.5.1 38124 1gp1A 198 8.92e+00 1gp1A c.47.1.10 33059 1d0nA 729 9.18e+00 1d0nA d.109.1.1 40834 d.109.1.1 40835 d.109.1.1 40836 d.109.1.1 40837 d.109.1.1 40838 d.109.1.1 40839 1qdlB 195 9.22e+00 1qdlB c.23.16.1 31437 1l6pA 125 1.03e+01 b.1.17.1 73626 1gmyA 261 1.03e+01 d.3.1.1 76236 1ao0A 459 1.04e+01 1ecfB c.61.1.1 34049 d.153.1.1 41816 1jpeA 151 1.05e+01 b.1.17.1 77146 1hpgA 187 1.10e+01 1qq4A b.47.1.1 25813 1mgtA 174 1.10e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1v5lA 103 1.11e+01 1lgyA 269 1.14e+01 3tgl c.69.1.17 34758 1jk7A 323 1.17e+01 1auiA d.159.1.3 63144 1d0qA 103 1.29e+01 1d0qA g.41.3.2 45208 1a8h 500 1.31e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1kcqA 104 1.39e+01 d.109.1.1 68449 2sak 121 1.40e+01 2sak d.15.5.1 37711 1iciA 256 1.41e+01 1iciA c.31.1.5 62266 1ithA 141 1.45e+01 1ithA a.1.1.2 15623 1dmmA 131 1.50e+01 1opy d.17.4.3 38114 1shkA 173 1.59e+01 1shkA c.37.1.2 31932 1iu9A 111 1.61e+01 c.78.2.1 -8500 1lizA 136 1.62e+01 1h09A 338 1.65e+01 b.109.1.1 83420 c.1.8.8 83421 1ea2A 131 1.72e+01 d.17.4.3 64860 1ejxA 100 1.73e+01 d.8.1.1 83182 3pvaA 335 1.77e+01 3pvaA d.153.1.3 41854 1c76A 136 1.83e+01 2sak d.15.5.1 37718 1j6rA 214 1.83e+01 d.173.1.2 71598 1olsB 342 1.83e+01 c.36.1.7 -6919 c.48.1.2 -7529 1eriA 276 1.84e+01 1ckqA c.52.1.1 33231 1cqxA 403 1.89e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1iazA 179 1.94e+01 1iazA b.97.1.1 62131 2shkA 173 2.02e+01 1shkA c.37.1.2 31934 1juhA 350 2.03e+01 b.82.1.5 71884 1di1A 300 2.05e+01 1di1A a.128.1.4 19446 1m2kA 249 2.05e+01 c.31.1.5 84754 1ejeA 192 2.14e+01 1ejeA b.45.1.2 25757 2kauA 100 2.15e+01 1ubpA d.8.1.1 37335 1nw2A 105 2.17e+01 c.47.1.1 -7380 1q4rA 112 2.18e+01 d.58.4.4 -9943 1p9rA 418 2.18e+01 c.37.1.11 -7142 1fuxA 166 2.20e+01 1fjjA b.17.1.2 60034 1mkeA 152 2.21e+01 b.55.1.4 79231 1fwcA 100 2.22e+01 1ubpA d.8.1.1 37331 1jr2A 286 2.22e+01 c.113.1.1 67111 1jb0D 138 2.26e+01 1jb0D d.187.1.1 62823 2pvaA 345 2.29e+01 3pvaA d.153.1.3 41850 1q1rA 431 2.34e+01 c.3.1.5 -6048 c.3.1.5 -6049 d.87.1.1 -10502 1lc5A 364 2.36e+01 c.67.1.1 73827 1m5sA 297 2.36e+01 d.58.33.1 74511 d.58.33.1 74512 1fjmA 330 2.37e+01 1auiA d.159.1.3 42082 1v5xA 203 2.41e+01 c.1.2.4 -5169 1kjvA 284 2.54e+01 b.1.1.2 77421 d.19.1.1 77422 1csbB 205 2.58e+01 1theB 1h2xA 710 2.58e+01 b.69.7.1 76598 c.69.1.4 76599 2rusB 490 2.60e+01 1burA c.1.14.1 29385 d.58.9.1 39291 1g3mA 294 2.65e+01 c.37.1.5 83268 1i60A 278 2.70e+01 c.1.15.4 71118 1q53A 112 2.72e+01 d.58.4.4 -9944 1qc9A 276 2.73e+01 1ckqA c.52.1.1 33235 1yagA 375 2.73e+01 1yagA c.55.1.1 33449 c.55.1.1 33450 1vhvA 268 2.74e+01 c.90.1.1 -8619 1l7dA 384 2.79e+01 c.2.1.4 77774 c.23.12.2 77775 1mqoA 227 2.84e+01 1h1iC 350 2.86e+01 b.82.1.5 76471 3tgl 269 2.87e+01 3tgl c.69.1.17 34733 2bc2A 227 2.88e+01 1a7tA d.157.1.1 42031 1g2rA 100 2.89e+01 1g2rA d.192.1.1 60231 1h1iD 350 2.94e+01 b.82.1.5 76472 1ff4A 65 2.95e+01 g.7.1.1 83251 1fl0A 171 2.96e+01 1eujA b.40.4.4 25315 1dz3A 130 3.00e+01 1dz3A c.23.1.1 31105 1ptmA 329 3.04e+01 unknown_sccs -8456 1jbuL 63 3.08e+01 1hcgB g.3.11.1 62857 1m1zA 513 3.13e+01 c.26.2.1 78457 d.153.1.1 78458 1griA 217 3.13e+01 1griA b.34.2.1 24531 b.34.2.1 24532 d.93.1.1 40473 1h2wA 710 3.15e+01 b.69.7.1 76596 c.69.1.4 76597 1v1rB 342 3.19e+01 1aim 215 3.21e+01 1cs8A d.3.1.1 37044 1awcB 153 3.23e+01 1bd8 d.211.1.1 19156 1allA 160 3.28e+01 1qgwC a.1.1.3 15647 1kv9A 668 3.28e+01 a.3.1.6 73056 b.70.1.1 73057 1lkcA 364 3.33e+01 c.67.1.1 73978 1hy3A 294 3.33e+01 c.37.1.5 71090 1gjxA 81 3.34e+01 b.84.1.1 65222 1dtwB 342 3.39e+01 1qs0B c.36.1.7 31828 c.48.1.2 33102 1nd4A 264 3.43e+01 d.144.1.6 -11381 1qfmA 710 3.44e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 1jgtA 513 3.45e+01 c.26.2.1 66684 d.153.1.1 66685 1o7bT 98 3.45e+01 d.169.1.4 -11647 1hbnC 248 3.49e+01 1mroC d.58.31.1 60902 1kliL 69 3.51e+01 g.3.11.1 77436 1b87A 181 3.53e+01 1b87A d.108.1.1 40797 1gzwA 134 3.56e+01 b.29.1.3 -3412 1efdN 266 3.58e+01 1efdN c.92.2.1 35597 1e8nA 710 3.58e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1jdpA 441 3.65e+01 c.93.1.1 62906 1cl8A 276 3.66e+01 1ckqA c.52.1.1 33230 1n71A 180 3.67e+01 d.108.1.1 85370 1eujA 166 3.71e+01 1eujA b.40.4.4 25316 1h1iB 350 3.77e+01 b.82.1.5 76470 1vid 221 3.78e+01 1vid c.66.1.1 34178 1qz5A 375 3.80e+01 c.55.1.1 -7590 c.55.1.1 -7591 1bxnA 485 3.85e+01 1burA c.1.14.1 29376 d.58.9.1 39282 5rubA 490 3.87e+01 1burA c.1.14.1 29382 d.58.9.1 39288 2bdpA 580 3.92e+01 1xwl c.55.3.5 33709 e.8.1.1 43002 1mroC 247 3.93e+01 1mroC d.58.31.1 39437 1a6wL 109 3.93e+01 1mfa b.1.1.1 20252 1iqrA 420 3.95e+01 a.99.1.1 66275 c.28.1.1 66276 1ilr1 152 3.97e+01 1irp