# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ucsA 64 2.44e-02 b.85.1.1 88466 1c89A 134 5.26e-02 1msi b.85.1.1 28314 b.85.1.1 28315 1msi 70 1.16e-01 1msi b.85.1.1 28281 1hg7A 66 2.30e-01 1msi b.85.1.1 28280 1ml9A 302 1.39e+00 b.85.7.1 79282 1ithA 141 2.55e+00 1ithA a.1.1.2 15623 1c3yA 108 2.57e+00 1c3yA a.39.2.1 17387 1fiuA 286 2.86e+00 1fiuA c.52.1.10 33317 2tmkA 216 6.56e+00 3tmkA c.37.1.1 31928 1lizA 136 7.98e+00 1jfkA 134 8.64e+00 a.39.1.5 66639 1b9wA 89 8.93e+00 1b9wA g.3.11.4 44334 g.3.11.4 44335 2sas 185 9.06e+00 2sas a.39.1.5 17258 1fp1D 372 9.31e+00 1fpqA a.4.5.29 59939 c.66.1.12 59940 1mejA 223 1.10e+01 c.65.1.1 79029 1im5A 180 1.11e+01 unknown_sccs 66211 1jw2A 72 1.15e+01 a.23.5.1 67372 1bxiB 134 1.15e+01 1bxiB d.4.1.1 37136 1cdcA 99 1.16e+01 1cdcA b.1.1.1 19746 1emvB 134 1.20e+01 1bxiB d.4.1.1 37135 1el6B 219 1.21e+01 1el6B d.182.1.1 42607 1el6A 219 1.28e+01 1el6B d.182.1.1 42606 1cdcB 99 1.51e+01 1cdcA b.1.1.1 19747 1q2wA 308 1.60e+01 b.47.1.4 88355 1nkiA 135 1.61e+01 d.32.1.2 -9544 1neq 74 1.61e+01 1neq a.35.1.2 17063 1ku2A 241 1.71e+01 a.4.13.1 83096 a.177.1.1 83097 1lqpA 135 1.71e+01 d.32.1.2 78151 1o6sA 466 1.91e+01 b.1.18.15 81094 c.10.2.1 81095 1k5dC 386 1.96e+01 c.10.1.2 68170 1mhdA 132 1.99e+01 1mhdA d.164.1.1 42175 1eayC 74 2.00e+01 1eayC d.58.24.1 39386 1l0oA 150 2.02e+01 d.122.1.3 73403 1ten 90 2.05e+01 1ten b.1.2.1 21990 1bf5A 545 2.14e+01 1bg1A a.47.1.1 17766 b.2.5.5 22460 d.93.1.1 40526 1ozjA 144 2.25e+01 d.164.1.1 -11537 1hb6A 86 2.29e+01 a.11.1.1 70959 1qbjA 81 2.30e+01 1qbjA a.4.5.19 16155 1fr2B 134 2.38e+01 d.4.1.1 83257 1q3oA 109 2.48e+01 b.36.1.1 -3776 1o6vA 466 2.66e+01 b.1.18.15 81099 c.10.2.1 81100 1us7B 265 2.70e+01 unknown_sccs -1518 1vjeA 166 2.89e+01 d.185.1.2 -10261 1jr1A 514 2.98e+01 c.1.5.1 63241 d.37.1.1 63242 d.37.1.1 63243 1amx 180 3.06e+01 1amx b.2.3.1 22410 1dujA 187 3.09e+01 1dujA d.135.1.1 41449 1d0qA 103 3.12e+01 1d0qA g.41.3.2 45208 1innA 166 3.18e+01 1j98A d.185.1.2 62608 1p2fA 220 3.24e+01 a.4.6.1 87720 c.23.1.1 87721 1i3dA 146 3.25e+01 a.1.1.2 61587 1yrgB 385 3.26e+01 1yrgA c.10.1.2 30855 1qwiA 143 3.26e+01 d.227.1.1 -11183 1yrgA 385 3.29e+01 1yrgA c.10.1.2 30854 1fu1B 203 3.38e+01 1fu1B b.59.1.1 27077 h.1.11.1 45631 1jbuL 63 3.45e+01 1hcgB g.3.11.1 62857 1fu1A 203 3.59e+01 1fu1B b.59.1.1 27076 h.1.11.1 45630 1bowA 159 3.67e+01 1bowA d.60.1.1 39528 1qgpA 77 3.71e+01 1qbjA a.4.5.19 16158 1q3eA 207 3.76e+01 b.82.3.2 -4922 1kliL 69 3.80e+01 g.3.11.1 77436 1a64A 97 3.91e+01 1cdcA b.1.1.1 19750 1a1w 91 3.99e+01 1a1z a.77.1.4 18425 1lkoA 191 4.00e+01 a.25.1.1 78063 g.41.5.1 78064