a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0222 spsE, Bacillus subtilis
- gi|16080838|ref|NP_391666.1|_273:373 spsE [Bacillus subtilis subsp. subtilis str. 168]
- gi|730814|sp|P39625|SPSE_BACSU Spore coat polysaccharide biosynthesis protein spsE [Taxonomy]
- gi|629074|pir||S39722 spore coat polysaccharide synthesis protein spsE - Bacillus subtilis [Taxonomy]
- gi|413991|emb|CAA51623.1| ipa-67d [Bacillus subtilis]
- gi|2636322|emb|CAB15813.1| spsE [Bacillus subtilis subsp. subtilis str. 168]

                 10        20        30        40        50        60  
                 |         |         |         |         |         |  
   1 ...QGITKPVSEKLLGSSYKTTTAIEGEIRNFAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQG
   2 elkQGITKPVSEKLLGSSYKTTTAIEGEIRNFAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQG


            70        80        90       100 
            |         |         |         | 
   1 LHPRFFELLTSGVRAVRDIPADTGIVWDDILLKDSPFHE
   2 LHPRFFELLTSGVRAVRDIPADTGIVWDDILLKDSPFHE