# List of top-scoring protein chains for T0222.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oc0A 379 2.68e-01 e.1.1.1 86790 1db2A 377 2.69e-01 1sek e.1.1.1 42672 1dvmA 379 2.70e-01 1sek e.1.1.1 42663 1a7cA 379 2.92e-01 1sek e.1.1.1 42660 1lj5A 379 2.92e-01 e.1.1.1 73928 9paiA 379 2.93e-01 1sek e.1.1.1 42667 1c5gA 402 2.94e-01 1sek e.1.1.1 42661 1n8yC 608 9.40e-01 c.10.2.5 80314 c.10.2.5 80315 g.3.9.1 80316 g.3.9.1 80317 1k6dA 220 2.64e+00 unknown_sccs 72082 1elkA 157 3.64e+00 1dvpA a.118.9.2 19217 1w02A 131 5.16e+00 1ea2A 131 5.40e+00 d.17.4.3 64860 1p49A 562 7.49e+00 c.76.1.2 -8432 1e97A 131 9.18e+00 d.17.4.3 64803 1im5A 180 9.80e+00 unknown_sccs 66211 1k41A 131 1.03e+01 d.17.4.3 77252 1fiuA 286 1.24e+01 1fiuA c.52.1.10 33317 1vzzA 131 1.45e+01 1o63A 219 1.49e+01 c.94.1.1 -8691 1dmqA 131 1.51e+01 1opy d.17.4.3 38116 1oh0A 131 1.57e+01 d.17.4.3 87004 1c7hA 131 1.57e+01 1opy d.17.4.3 38117 1rxkA 125 1.63e+01 b.61.1.1 -4510 1aim 215 1.89e+01 1cs8A d.3.1.1 37044 1mai 131 2.01e+01 1mai b.55.1.1 26951 1octC 156 2.15e+01 1au7A a.4.1.1 15991 a.35.1.1 17017 1me4A 215 2.18e+01 d.3.1.1 79023 1cqtA 163 2.27e+01 1au7A a.4.1.1 15992 a.35.1.1 17018 1n5dA 288 2.30e+01 c.2.1.2 80030 1s98A 107 2.32e+01 1fcjA 322 2.40e+01 1oasA c.79.1.1 35289 1d6sA 322 2.45e+01 1oasA c.79.1.1 35295 1ni3A 392 2.48e+01 c.37.1.8 80531 d.15.10.2 80532 2sas 185 2.57e+01 2sas a.39.1.5 17258 1r94A 118 2.58e+01 b.124.1.1 -4402 1w01A 131 2.73e+01 3hipA 82 2.74e+01 g.35.1.1 44988 1dmnA 131 2.76e+01 1opy d.17.4.3 38115 1tqyA 424 2.79e+01 1cqsA 131 2.80e+01 d.17.4.3 83165 1dmmA 131 2.82e+01 1opy d.17.4.3 38114 1ogxA 131 2.88e+01 d.17.4.3 87002 1fl2A 310 2.89e+01 1hyuA c.3.1.5 59869 c.3.1.5 59870 1s5lB 510 2.98e+01 1dgjA 907 3.08e+01 1alo a.56.1.1 17909 d.15.4.2 37694 d.41.1.1 38585 d.133.1.1 41415 1bev3 242 3.49e+01 1aym3 1evjA 352 3.64e+01 1ofgA c.2.1.3 30070 d.81.1.5 39985 1eksA 161 3.66e+01 1ekrA d.58.21.1 39381 1o4xA 167 3.68e+01 a.4.1.1 -188 a.35.1.1 -791 1ekrA 161 3.69e+01 1ekrA d.58.21.1 39380 2av8A 340 3.73e+01 1xikA a.25.1.2 16792 1j7yA 141 3.81e+01 a.1.1.2 66426 1foeA 377 3.83e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1p85N 114 3.90e+01 i.1.1.1 87883 1nj4A 363 3.91e+01 b.105.1.1 80545 e.3.1.1 80546 1esuA 263 3.91e+01 1btl e.3.1.1 42696