# List of top-scoring protein chains for t04-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1a7cA	379	4.21e-02	1sek	e.1.1.1	42660
1lj5A	379	5.70e-02		e.1.1.1	73928
1k6dA	220	3.04e-01		unknown_sccs	72082
1f1xA	322	1.14e+00		d.32.1.3	83208
				d.32.1.3	83209
1tqyA	424	1.20e+00			
1nykA	165	2.78e+00		b.33.1.1	86408
1f1uA	323	4.45e+00		d.32.1.3	83200
				d.32.1.3	83201
1a8q	274	6.52e+00	1brt	c.69.1.12	34702
1mai	131	6.74e+00	1mai	b.55.1.1	26951
1q0rA	298	7.91e+00		unknown_sccs	-8330
1mpp	361	8.01e+00	2rmpA	b.50.1.2	26856
1vjeA	166	1.30e+01		d.185.1.2	-10261
1innA	166	1.30e+01	1j98A	d.185.1.2	62608
1fl2A	310	1.39e+01	1hyuA	c.3.1.5	59869
				c.3.1.5	59870
1a8s	273	1.52e+01	1brt	c.69.1.12	34710
2bc2A	227	1.59e+01	1a7tA	d.157.1.1	42031
3tgl	269	1.63e+01	3tgl	c.69.1.17	34733
1r2jA	366	1.74e+01		a.29.3.1	-748
				e.6.1.1	-11864
1jf8A	131	1.97e+01		c.44.1.1	66621
1pne	140	2.01e+01	1pne	d.110.1.1	40866
1mqoA	227	2.24e+01			
1s98A	107	2.35e+01			
1ofcX	304	2.56e+01		a.4.1.3	-195
				unknown_sccs	-199
				unknown_sccs	-978
1jsdA	319	2.68e+01		b.19.1.2	63258
1eg2A	319	2.68e+01	1eg2A	c.66.1.11	34249
1emvB	134	2.72e+01	1bxiB	d.4.1.1	37135
1oapA	109	2.85e+01		unknown_sccs	-10428
1jl3A	139	3.04e+01		c.44.1.1	66826
1itbB	315	3.10e+01	1itbB	b.1.1.4	21720
				b.1.1.4	21721
				b.1.1.4	21722
1fr2B	134	3.12e+01		d.4.1.1	83257
1btl	263	3.40e+01	1btl	e.3.1.1	42691
1o5uA	101	3.49e+01		b.82.1.8	-4845
1pjcA	361	3.50e+01	1sayA	c.2.1.4	30101
				c.23.12.2	31361
1m40A	263	3.52e+01		e.3.1.1	74437
1i0cA	60	3.54e+01	1aojA	b.34.2.1	61485
1vf7A	369	3.60e+01			
1gnyA	153	3.66e+01		b.18.1.11	65404
1t0bA	252	3.71e+01			
1ermA	263	3.76e+01	1btl	e.3.1.1	42690
1lla	628	3.76e+01	1lla	a.85.1.1	18485
				a.86.1.1	18496
				b.1.18.3	21861
1kzyC	259	3.82e+01		c.15.1.4	73383
				c.15.1.4	73384
1ooyA	481	3.82e+01		unknown_sccs	-6867
				unknown_sccs	-6873
1k4mA	213	3.85e+01		c.26.1.3	77258
1owcA	427	3.89e+01			
1u9aA	160	3.91e+01	1u9aA	d.20.1.1	38333