# List of top-scoring protein chains for t04-100-30-near-backbone-11 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1lj5A	379	3.77e-02		e.1.1.1	73928
1a7cA	379	5.65e-02	1sek	e.1.1.1	42660
1elkA	157	4.88e-01	1dvpA	a.118.9.2	19217
1fiuA	286	1.82e+00	1fiuA	c.52.1.10	33317
1foeA	377	1.86e+00	1foeA	a.87.1.1	18517
				b.55.1.1	26969
1mai	131	2.16e+00	1mai	b.55.1.1	26951
1k6dA	220	3.82e+00		unknown_sccs	72082
1b5eA	246	3.85e+00	1b5eA	d.117.1.1	41056
1tqyA	424	6.24e+00			
1opy	131	6.76e+00	1opy	d.17.4.3	38113
1oh0A	131	1.02e+01		d.17.4.3	87004
1dmmA	131	1.23e+01	1opy	d.17.4.3	38114
1uw1A	80	1.24e+01		unknown_sccs	-13438
1j7yA	141	1.61e+01		a.1.1.2	66426
1f2vA	219	1.80e+01	1f2vA	c.23.17.1	59627
1im5A	180	1.85e+01		unknown_sccs	66211
1ofgA	381	2.01e+01	1ofgA	c.2.1.3	30064
				d.81.1.5	39979
1ui7A	638	2.18e+01		b.30.2.1	-3523
				d.17.2.1	-9268
				d.17.2.1	-9269
1or0B	528	2.23e+01			
1o5uA	101	2.24e+01		b.82.1.8	-4845
1k4nA	192	2.35e+01		d.32.1.5	72059
1nzoA	363	2.40e+01		b.105.1.1	-2933
				e.3.1.1	-11784
1n5dA	288	2.42e+01		c.2.1.2	80030
1p49A	562	2.44e+01		c.76.1.2	-8432
1ui8A	638	2.48e+01		b.30.2.1	-3525
				d.17.2.1	-9272
				d.17.2.1	-9273
1iqyA	638	2.55e+01		b.30.2.1	76763
				d.17.2.1	76764
				d.17.2.1	76765
1h6dA	433	2.65e+01		c.2.1.3	65656
				d.81.1.5	65657
1i5jA	79	2.96e+01	1i5jA	j.39.1.1	61788
1avk	638	2.97e+01	1a2vA	b.30.2.1	24410
				d.17.2.1	38047
				d.17.2.1	38048
1jpzA	473	3.19e+01		a.104.1.1	67069
1hu4A	288	3.24e+01	1hu4A		
1d4tA	104	3.65e+01	1d4tA	d.93.1.1	40537
1s5lU	134	3.68e+01			
1dptA	117	3.68e+01	1dptA	d.80.1.3	39862
1v4vA	376	3.85e+01		c.87.1.3	-8583
1koqA	253	3.92e+01	2cba	b.74.1.1	27964
1ekrA	161	3.97e+01	1ekrA	d.58.21.1	39380