# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1a7cA	379	7.06e-02	1sek	e.1.1.1	42660
1lj5A	379	1.31e-01		e.1.1.1	73928
1k6dA	220	6.88e-01		unknown_sccs	72082
1tqyA	424	2.21e+00			
1f1xA	322	5.66e+00		d.32.1.3	83208
				d.32.1.3	83209
1mpp	361	6.72e+00	2rmpA	b.50.1.2	26856
1a8q	274	7.52e+00	1brt	c.69.1.12	34702
1mai	131	9.35e+00	1mai	b.55.1.1	26951
1jf8A	131	1.11e+01		c.44.1.1	66621
1elkA	157	1.51e+01	1dvpA	a.118.9.2	19217
2fxb	81	1.52e+01	2fxb		
1jl3A	139	1.62e+01		c.44.1.1	66826
1iqzA	81	1.99e+01		d.58.1.4	66281
2bc2A	227	2.13e+01	1a7tA	d.157.1.1	42031
1usuA	260	2.35e+01		unknown_sccs	-9045
1mqoA	227	2.36e+01			
1vjeA	166	2.48e+01		d.185.1.2	-10261
1innA	166	2.54e+01	1j98A	d.185.1.2	62608
1p49A	562	2.62e+01		c.76.1.2	-8432
1fl2A	310	2.74e+01	1hyuA	c.3.1.5	59869
				c.3.1.5	59870
1jsdA	319	2.75e+01		b.19.1.2	63258
1or0B	528	3.10e+01			
1cl8A	276	3.13e+01	1ckqA	c.52.1.1	33230
1o6vA	466	3.31e+01		b.1.18.15	81099
				c.10.2.1	81100
1nzoA	363	3.31e+01		b.105.1.1	-2933
				e.3.1.1	-11784
1amm	174	3.33e+01	1amm	b.11.1.1	23587
				b.11.1.1	23588
4gcr	174	3.33e+01	1amm	b.11.1.1	23589
				b.11.1.1	23590
1gu9A	177	3.33e+01		a.152.1.1	65540
1itbB	315	3.39e+01	1itbB	b.1.1.4	21720
				b.1.1.4	21721
				b.1.1.4	21722
1lw1A	177	3.54e+01		a.152.1.1	74290
1t0bA	252	3.55e+01			
1f1uA	323	3.59e+01		d.32.1.3	83200
				d.32.1.3	83201
1i0cA	60	3.75e+01	1aojA	b.34.2.1	61485
3tgl	269	3.84e+01	3tgl	c.69.1.17	34733
1s5lB	510	3.84e+01			
1emvB	134	3.86e+01	1bxiB	d.4.1.1	37135