# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lj5A 379 1.58e-01 e.1.1.1 73928 1a7cA 379 1.74e-01 1sek e.1.1.1 42660 1k6dA 220 4.19e-01 unknown_sccs 72082 1nykA 165 1.16e+00 b.33.1.1 86408 1tqyA 424 1.21e+00 1f1xA 322 2.43e+00 d.32.1.3 83208 d.32.1.3 83209 1mai 131 2.50e+00 1mai b.55.1.1 26951 1mpp 361 3.01e+00 2rmpA b.50.1.2 26856 1vjeA 166 4.02e+00 d.185.1.2 -10261 1q0rA 298 5.16e+00 unknown_sccs -8330 1f1uA 323 5.72e+00 d.32.1.3 83200 d.32.1.3 83201 1emvB 134 6.09e+00 1bxiB d.4.1.1 37135 1usuA 260 6.23e+00 unknown_sccs -9045 1innA 166 6.40e+00 1j98A d.185.1.2 62608 1s98A 107 6.84e+00 1jsdA 319 6.99e+00 b.19.1.2 63258 3tgl 269 7.22e+00 3tgl c.69.1.17 34733 1fr2B 134 7.28e+00 d.4.1.1 83257 1gen 218 8.56e+00 1gen b.66.1.1 27536 2arcA 164 9.03e+00 2arcA b.82.4.1 28148 1fl2A 310 1.11e+01 1hyuA c.3.1.5 59869 c.3.1.5 59870 1p49A 562 1.20e+01 c.76.1.2 -8432 1g6gA 127 1.41e+01 1g6gA b.26.1.2 23916 1smrA 335 1.62e+01 1smrA b.50.1.2 26878 2bc2A 227 1.63e+01 1a7tA d.157.1.1 42031 1thtA 305 1.72e+01 1thtA c.69.1.13 34711 1itbB 315 1.77e+01 1itbB b.1.1.4 21720 b.1.1.4 21721 b.1.1.4 21722 1r2jA 366 1.86e+01 a.29.3.1 -748 e.6.1.1 -11864 1s72Q 96 2.04e+01 1qo7A 394 2.04e+01 1qo7A c.69.1.11 34697 1nj4A 363 2.05e+01 b.105.1.1 80545 e.3.1.1 80546 1ofcX 304 2.10e+01 a.4.1.3 -195 unknown_sccs -199 unknown_sccs -978 1yghA 164 2.10e+01 1yghA d.108.1.1 40802 1isiA 265 2.10e+01 e.4.1.1 71394 1jj2P 95 2.13e+01 1ffkN b.34.5.1 63101 1mqoA 227 2.16e+01 1s5lB 510 2.17e+01 1a7j 290 2.23e+01 1a7j c.37.1.6 31952 1cl8A 276 2.29e+01 1ckqA c.52.1.1 33230 1lla 628 2.39e+01 1lla a.85.1.1 18485 a.86.1.1 18496 b.1.18.3 21861 1b78A 193 2.40e+01 1b78A c.51.4.1 33221 1gnyA 153 2.43e+01 b.18.1.11 65404 1n57A 291 2.45e+01 c.23.16.2 85328 2bpa1 426 2.53e+01 2bpa1 1owcA 427 2.67e+01 1oapA 109 2.69e+01 unknown_sccs -10428 1k3pA 426 2.73e+01 a.103.1.1 77237 1a8q 274 2.84e+01 1brt c.69.1.12 34702 1r94A 118 3.00e+01 b.124.1.1 -4402 1ko7A 314 3.02e+01 c.98.2.1 72797 c.91.1.2 72798 1o6vA 466 3.02e+01 b.1.18.15 81099 c.10.2.1 81100 1ppjC 379 3.26e+01 5croA 66 3.31e+01 1orc a.35.1.2 17044 1fjsL 52 3.45e+01 1hcgB g.3.11.1 44226 1lqsR 214 3.54e+01 b.1.2.1 74194 b.1.2.1 74195 1pz1A 333 3.72e+01 c.1.7.1 -5255 1vf7A 369 3.79e+01 1od5A 492 3.84e+01 b.82.1.2 86832 b.82.1.2 86833 1fonA 240 3.92e+01 5ptp b.47.1.2 26231 1im5A 180 3.93e+01 unknown_sccs 66211