# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ucsA 64 9.45e-05 b.85.1.1 88466 1hg7A 66 7.56e-04 1msi b.85.1.1 28280 1lfaA 187 4.02e-01 1ido c.62.1.1 34122 1mjnA 179 6.12e-01 c.62.1.1 79210 1jhgA 101 8.80e-01 1jhgA a.4.12.1 19009 1ml9A 302 1.92e+00 b.85.7.1 79282 1vjeA 166 2.54e+00 d.185.1.2 -10261 1innA 166 2.55e+00 1j98A d.185.1.2 62608 1uurA 473 3.19e+00 a.47.1.1 -968 b.2.5.5 -2904 d.93.1.1 -10632 1amx 180 3.38e+00 1amx b.2.3.1 22410 1eb7A 323 4.01e+00 1eb7A a.3.1.5 59404 a.3.1.5 59405 1jhfA 202 5.09e+00 a.4.5.2 63057 b.87.1.1 63058 1mf7A 194 5.34e+00 c.62.1.1 84937 1emvB 134 5.46e+00 1bxiB d.4.1.1 37135 1fr2B 134 5.70e+00 d.4.1.1 83257 1hkkA 364 5.80e+00 c.1.8.5 -5384 d.26.3.1 -9506 1fthA 122 6.07e+00 d.150.1.2 60028 1cl8A 276 7.19e+00 1ckqA c.52.1.1 33230 1ido 192 7.23e+00 1ido c.62.1.1 34139 1aym3 238 7.36e+00 1aym3 2sas 185 8.28e+00 2sas a.39.1.5 17258 1ks9A 291 8.46e+00 a.100.1.7 68857 c.2.1.6 68858 1jqlB 140 8.55e+00 c.37.1.20 63234 1c0pA 363 8.64e+00 1an9A c.4.1.2 30647 d.16.1.3 37934 1fc6A 388 9.59e+00 1fc6A b.36.1.3 64738 c.14.1.2 64739 1pcfA 66 1.02e+01 1pcfA d.18.1.1 38142 1o5oA 221 1.07e+01 c.61.1.1 -7954 1go4A 205 1.11e+01 d.135.1.1 70292 1v5xA 203 1.17e+01 c.1.2.4 -5169 1k2yX 463 1.18e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1bo4A 168 1.25e+01 1bo4A d.108.1.1 40798 1p5dX 463 1.26e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1jyoA 130 1.32e+01 d.198.1.1 67483 1l7dA 384 1.37e+01 c.2.1.4 77774 c.23.12.2 77775 1plq 258 1.40e+01 1plq d.131.1.2 41388 d.131.1.2 41389 1jsxA 207 1.42e+01 c.66.1.20 71846 1ugpB 226 1.61e+01 1ireB 228 1.62e+01 b.34.4.4 76770 1dkgA 197 1.63e+01 1dkgA b.73.1.1 27812 h.1.9.1 45626 1kyqA 274 1.65e+01 c.2.1.11 73281 e.37.1.1 73282 1ex1A 605 1.65e+01 1ex1A c.1.8.7 29013 c.23.11.1 31347 1o0xA 262 1.68e+01 d.127.1.1 80755 1js8A 394 1.71e+01 a.86.1.1 67219 b.112.1.1 67220 1hl9A 449 1.80e+01 unknown_sccs -4694 unknown_sccs -5365 1f46A 140 1.81e+01 1f46A d.129.4.1 59643 1lrwA 600 1.85e+01 b.70.1.1 -4629 1v04A 355 1.87e+01 unknown_sccs -4592 1f1uA 323 1.91e+01 d.32.1.3 83200 d.32.1.3 83201 1a7j 290 1.93e+01 1a7j c.37.1.6 31952 1r62A 160 1.96e+01 1k94A 165 1.98e+01 a.39.1.8 68333 1f8gA 384 2.01e+01 1sayA c.2.1.4 59695 c.23.12.2 59696 1jf8A 131 2.10e+01 c.44.1.1 66621 1efdN 266 2.14e+01 1efdN c.92.2.1 35597 1qgeE 97 2.34e+01 1cvl 1iysA 262 2.35e+01 e.3.1.1 -11760 1f1xA 322 2.38e+01 d.32.1.3 83208 d.32.1.3 83209 1nq7A 244 2.38e+01 a.123.1.1 -1682 1lj5A 379 2.39e+01 e.1.1.1 73928 1a7cA 379 2.40e+01 1sek e.1.1.1 42660 4pgaA 337 2.47e+01 4pgaA c.88.1.1 35565 1q4rA 112 2.67e+01 d.58.4.4 -9943 1p0hA 318 2.68e+01 d.108.1.1 -10802 1f4qA 165 2.72e+01 1alvA a.39.1.8 17360 1pvc3 238 2.80e+01 1aym3 1jndA 420 2.84e+01 c.1.8.5 71757 d.26.3.1 71758 1r0wA 286 2.85e+01 c.37.1.12 -7158 1ivnA 190 2.86e+01 c.23.10.5 83719 1dpgA 485 2.96e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1v6sA 390 2.98e+01 c.86.1.1 -8567 1jltA 122 3.12e+01 a.133.1.2 66867 1s72O 116 3.20e+01 1ihkA 174 3.22e+01 1bfg b.42.1.1 62384 1vpi 122 3.22e+01 1poa a.133.1.2 19559 1qwiA 143 3.29e+01 d.227.1.1 -11183 1mu5A 471 3.30e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1oahA 519 3.37e+01 a.138.1.3 86736 1ul7A 102 3.41e+01 unknown_sccs -11020 1bza 262 3.42e+01 1btl e.3.1.1 42701 1rh5B 74 3.43e+01 unknown_sccs -12198 1o22A 170 3.51e+01 d.238.1.1 86557 1thfD 253 3.52e+01 1thfD c.1.2.1 28535 1a3aA 148 3.59e+01 1a3aA d.112.1.1 40917 1d8hA 311 3.61e+01 1d8iA d.63.1.1 39544 1j0aA 325 3.74e+01 c.79.1.1 83871 1top 162 3.85e+01 1ncx a.39.1.5 17223 1ni4A 365 3.88e+01 c.36.1.7 85728 1n83A 270 3.98e+01 a.123.1.1 80276