# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ucsA 64 2.82e-07 b.85.1.1 88466 1hg7A 66 1.92e-06 1msi b.85.1.1 28280 1lfaA 187 8.65e-02 1ido c.62.1.1 34122 1emvB 134 1.05e-01 1bxiB d.4.1.1 37135 1mjnA 179 1.07e-01 c.62.1.1 79210 1fr2B 134 1.25e-01 d.4.1.1 83257 1ml9A 302 4.34e-01 b.85.7.1 79282 1uurA 473 4.80e-01 a.47.1.1 -968 b.2.5.5 -2904 d.93.1.1 -10632 1jhgA 101 5.40e-01 1jhgA a.4.12.1 19009 1giqA 413 1.67e+00 d.166.1.1 76224 d.166.1.1 76225 1k2yX 463 1.94e+00 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 d.129.2.1 68066 1ks9A 291 2.04e+00 a.100.1.7 68857 c.2.1.6 68858 1hkkA 364 2.18e+00 c.1.8.5 -5384 d.26.3.1 -9506 1vjeA 166 2.25e+00 d.185.1.2 -10261 1dkgA 197 2.40e+00 1dkgA b.73.1.1 27812 h.1.9.1 45626 1bo4A 168 2.41e+00 1bo4A d.108.1.1 40798 1mf7A 194 2.54e+00 c.62.1.1 84937 1innA 166 2.68e+00 1j98A d.185.1.2 62608 1l6pA 125 3.19e+00 b.1.17.1 73626 1lrwA 600 3.27e+00 b.70.1.1 -4629 1o5oA 221 3.29e+00 c.61.1.1 -7954 1o0xA 262 3.48e+00 d.127.1.1 80755 1fuxA 166 3.51e+00 1fjjA b.17.1.2 60034 1a7j 290 3.58e+00 1a7j c.37.1.6 31952 1pfvA 551 3.72e+00 a.27.1.1 -727 c.26.1.1 -6603 g.41.1.1 -12765 1iejA 332 3.74e+00 1nnt c.94.1.2 62328 1ido 192 3.78e+00 1ido c.62.1.1 34139 1f4lA 551 3.79e+00 1qqtA a.27.1.1 59648 c.26.1.1 59649 g.41.1.1 59650 1kay 381 3.80e+00 1ba1 c.55.1.1 33385 c.55.1.1 33386 1fc6A 388 4.02e+00 1fc6A b.36.1.3 64738 c.14.1.2 64739 1js8A 394 4.35e+00 a.86.1.1 67219 b.112.1.1 67220 1fjjA 159 4.37e+00 1fjjA b.17.1.2 59852 1phk 298 4.48e+00 1cdkA d.144.1.7 41635 1jf8A 131 4.81e+00 c.44.1.1 66621 2fhi 147 5.03e+00 1fit d.13.1.1 37505 1pcfA 66 5.08e+00 1pcfA d.18.1.1 38142 1cjwA 166 5.09e+00 1cjwA d.108.1.1 40818 1fthA 122 5.48e+00 d.150.1.2 60028 1k94A 165 5.60e+00 a.39.1.8 68333 1aym3 238 5.82e+00 1aym3 1go4A 205 6.08e+00 d.135.1.1 70292 1dik 874 6.33e+00 1dik c.1.12.2 29304 c.8.1.1 30702 d.142.1.5 41572 1r62A 160 6.35e+00 2pviA 157 7.64e+00 3pviA c.52.1.6 33302 1p0hA 318 7.81e+00 d.108.1.1 -10802 1f46A 140 7.95e+00 1f46A d.129.4.1 59643 3pviA 157 8.03e+00 3pviA c.52.1.6 33300 1kqfA 1015 8.49e+00 b.52.2.2 72871 c.81.1.1 72872 2sas 185 8.70e+00 2sas a.39.1.5 17258 1vi2A 300 8.99e+00 c.2.1.7 -5960 c.58.1.5 -6366 1amx 180 9.06e+00 1amx b.2.3.1 22410 1fit 147 9.18e+00 1fit d.13.1.1 37499 1l7dA 384 9.35e+00 c.2.1.4 77774 c.23.12.2 77775 1jqlB 140 9.37e+00 c.37.1.20 63234 1ax4A 467 9.40e+00 1ax4A c.67.1.2 34391 1qahA 136 9.67e+00 d.79.1.1 -10377 1f1uA 323 9.70e+00 d.32.1.3 83200 d.32.1.3 83201 1nq7A 244 9.76e+00 a.123.1.1 -1682 1f4qA 165 9.81e+00 1alvA a.39.1.8 17360 1n9lA 109 9.87e+00 d.110.3.6 85468 1rwtA 232 9.98e+00 unknown_sccs -12345 1jltA 122 1.00e+01 a.133.1.2 66867 1qgeE 97 1.03e+01 1cvl 1nthA 458 1.06e+01 c.1.25.1 80730 1kyqA 274 1.09e+01 c.2.1.11 73281 e.37.1.1 73282 1bupA 386 1.10e+01 1ba1 c.55.1.1 33377 c.55.1.1 33378 1ivnA 190 1.12e+01 c.23.10.5 83719 1up8A 598 1.13e+01 a.111.1.2 -1480 1ugpB 226 1.19e+01 1ireB 228 1.20e+01 b.34.4.4 76770 1p5dX 463 1.20e+01 c.84.1.1 -8554 c.84.1.1 -8555 c.84.1.1 -8556 d.129.2.1 -11029 1o22A 170 1.23e+01 d.238.1.1 86557 1ul7A 102 1.23e+01 unknown_sccs -11020 1n83A 270 1.24e+01 a.123.1.1 80276 1hl9A 449 1.25e+01 unknown_sccs -4694 unknown_sccs -5365 1jhfA 202 1.31e+01 a.4.5.2 63057 b.87.1.1 63058 1vpi 122 1.32e+01 1poa a.133.1.2 19559 1dtwB 342 1.33e+01 1qs0B c.36.1.7 31828 c.48.1.2 33102 1mgtA 174 1.35e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1rl2A 137 1.36e+01 1rl2A b.34.5.3 24610 b.40.4.5 25342 1squA 155 1.43e+01 unknown_sccs -10229 1jdc 429 1.43e+01 1jdc b.71.1.1 27789 c.1.8.1 28776 1ckmA 330 1.45e+01 1ckmA b.40.4.6 25358 d.142.2.3 41585 1kjs 74 1.45e+01 1kjs a.50.1.1 17792 1dpgA 485 1.48e+01 1dpgA c.2.1.3 30074 d.81.1.5 39989 1kliL 69 1.48e+01 g.3.11.1 77436 1tk1A 260 1.57e+01 1r0wA 286 1.61e+01 c.37.1.12 -7158 1gvoA 364 1.61e+01 c.1.4.1 76357 1vyrA 364 1.62e+01 1h61A 364 1.67e+01 1oyc c.1.4.1 60657 1v6sA 390 1.70e+01 c.86.1.1 -8567 1ajsA 412 1.71e+01 1ajsA c.67.1.1 34276 1f39A 101 1.71e+01 1umuA b.87.1.1 28386 1omrA 201 1.71e+01 a.39.1.5 -854 1orc 71 1.72e+01 1orc a.35.1.2 17054 1tvlA 454 1.73e+01 1n7kA 234 1.75e+01 c.1.10.1 85374 1s96A 219 1.76e+01 c.37.1.1 -6972 1pc6A 146 1.78e+01 unknown_sccs -11739 1vypX 364 1.80e+01 1q9bA 43 1.81e+01 g.3.1.1 -12392 1jj2U 70 1.83e+01 1ffkS a.2.2.1 63106 1v5xA 203 1.83e+01 c.1.2.4 -5169 1s72V 71 1.83e+01 1qwiA 143 1.88e+01 d.227.1.1 -11183 1bg0 356 1.95e+01 1qh4A a.83.1.1 18476 d.128.1.2 41211 1eg3A 261 1.95e+01 1eg3A a.39.1.7 17376 a.39.1.7 17377 b.72.1.1 27805 1cvl 319 1.95e+01 1cvl c.69.1.18 34786 1ee8A 266 1.96e+01 1ee8A a.156.1.2 75823 b.113.1.1 75824 g.39.1.8 75825 1q4rA 112 1.98e+01 d.58.4.4 -9943 1rcqA 357 2.00e+01 1efvA 315 2.01e+01 1efvA c.26.2.3 31633 c.31.1.2 31728 1m15A 357 2.09e+01 a.83.1.1 78368 d.128.1.2 78369 1p65A 73 2.10e+01 unknown_sccs -10331 1m33A 258 2.11e+01 c.69.1.26 78514 1yrgA 385 2.13e+01 1yrgA c.10.1.2 30854 1efdN 266 2.15e+01 1efdN c.92.2.1 35597 1c1dA 355 2.18e+01 1bw9A c.2.1.7 30270 c.58.1.1 33918 1uxy 340 2.20e+01 2mbr d.145.1.2 41748 d.146.1.1 41761 1f8gA 384 2.21e+01 1sayA c.2.1.4 59695 c.23.12.2 59696 1mai 131 2.22e+01 1mai b.55.1.1 26951 1o0pA 104 2.25e+01 d.58.7.1 86535 1ep0A 185 2.25e+01 1dzrA b.82.1.1 28080 1jpaA 312 2.28e+01 d.144.1.7 67011 1ni9A 338 2.34e+01 e.7.1.2 85739 1lfb 99 2.35e+01 1lfb a.4.1.1 15989 1o6vA 466 2.42e+01 b.1.18.15 81099 c.10.2.1 81100 1ew6A 137 2.44e+01 1ewaA a.1.1.2 15637 1umdA 367 2.45e+01 c.36.1.11 -6969 1pne 140 2.49e+01 1pne d.110.1.1 40866 1hdhA 536 2.50e+01 c.76.1.2 65805 1ubkL 534 2.51e+01 e.18.1.1 88422 1e6yA 569 2.56e+01 1mroA a.89.1.1 18529 d.58.31.2 39447 1dzfA 215 2.56e+01 1dzfA c.52.3.1 33344 d.78.1.1 39753 1gg3A 279 2.56e+01 1ef1A a.11.2.1 16372 b.55.1.5 27007 d.15.1.4 37615 1kfwA 435 2.57e+01 c.1.8.5 77376 d.26.3.1 77377 1g55A 343 2.58e+01 1g55A c.66.1.26 34247 1eqoA 158 2.61e+01 1hka 1f9yA 158 2.63e+01 d.58.30.1 83249 1r6xA 395 2.64e+01 b.122.1.3 -5125 c.26.1.5 -6620 1f1xA 322 2.64e+01 d.32.1.3 83208 d.32.1.3 83209 1avsA 90 2.67e+01 1cll a.39.1.5 17226 1mu5A 471 2.77e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1l1zA 274 2.77e+01 a.156.1.2 75911 b.113.1.1 75912 g.39.1.8 75913 1cl8A 276 2.84e+01 1ckqA c.52.1.1 33230 1v04A 355 2.87e+01 unknown_sccs -4592 1smlA 269 2.90e+01 1smlA d.157.1.1 42053 1ljoA 77 2.91e+01 b.38.1.1 73941 1duvG 333 2.93e+01 1othA c.78.1.1 35228 c.78.1.1 35229 1jndA 420 2.93e+01 c.1.8.5 71757 d.26.3.1 71758 1j08A 226 2.95e+01 c.47.1.2 83855 c.47.1.2 83856 1v1rB 342 2.96e+01 1h2rL 534 2.98e+01 1h2rL e.18.1.1 43298 1mtyD 512 2.98e+01 1mhyD a.25.1.2 16742 5croA 66 3.00e+01 1orc a.35.1.2 17044 1ixcA 294 3.05e+01 a.4.5.37 83764 c.94.1.1 83765 1mwvA 714 3.06e+01 a.93.1.3 85161 a.93.1.3 85162 1twdA 256 3.06e+01 1v4xB 146 3.21e+01 1a8q 274 3.21e+01 1brt c.69.1.12 34702 1otjA 283 3.23e+01 b.82.2.5 -4893 1qazA 351 3.24e+01 1qazA a.102.3.1 18848 1nbfD 76 3.26e+01 d.15.1.1 80390 1br1B 150 3.31e+01 1wdcC a.39.1.5 17309 1gcvB 136 3.33e+01 1cg5B a.1.1.2 15589 1ab4 477 3.34e+01 1ab4 e.11.1.1 43251 1gkmA 509 3.34e+01 a.127.1.2 70228 1kblA 873 3.34e+01 c.1.12.2 68384 c.8.1.1 68385 d.142.1.5 68386 1nd7A 374 3.37e+01 d.148.1.1 -11394 1oahA 519 3.41e+01 a.138.1.3 86736 1h9dA 134 3.50e+01 1cmoA b.2.5.6 60821 1ubi 76 3.52e+01 1ubi d.15.1.1 37584 1n3jA 119 3.52e+01 b.85.7.2 79963 1ogwA 76 3.52e+01 d.15.1.1 87001 1oniA 137 3.57e+01 d.79.1.1 87144 1top 162 3.58e+01 1ncx a.39.1.5 17223 1tiyA 164 3.58e+01 1g2oA 268 3.67e+01 1b8oA c.56.2.1 60228 1o08A 221 3.68e+01 c.108.1.6 86525 1g24A 211 3.69e+01 1g24A d.166.1.1 42270 1go3F 107 3.70e+01 a.60.8.2 65407 1v1aA 309 3.76e+01 c.72.1.1 -8400 2ng1 293 3.78e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1l5xA 280 3.84e+01 c.106.1.1 77718 2lhb 149 3.98e+01 2fal a.1.1.2 15597