PFRMAT RR
TARGET T0222
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximation of the probability
REMARK as provided by the neural network.
REMARK The predictions are limited to a score >= .18 which
REMARK is an approximation of the probability.
REMARK
METHOD The predictor is an artificial neural network
METHOD using 280 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD NN: /projects/compbio/experiments/protein-predict/casp6/networks/NN280-240n300.net.28
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
MODEL 1
HFTIDKNLPGADHSFALNPDELKEMVDGIRKTEAELKQGITKPVSEKLLG
SSYKTTTAIEGEIRNFAYRGIFTTAPIQKGEAFSEDNIAVLRPGQKPQGL
HPRFFELLTSGVRAVRDIPADTGIVWDDILLKDSPFHE
267 298 0 8 0.4896
307 326 0 8 0.4063
248 309 0 8 0.3961
267 307 0 8 0.2703
250 326 0 8 0.2363
294 303 0 8 0.2346
250 307 0 8 0.2261
248 307 0 8 0.20485
248 324 0 8 0.20145
309 358 0 8 0.1938
267 326 0 8 0.187
END