CreatePredAlphaCost pred_alpha2k alpha11 T0222.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0222.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 5 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 1 \
	bystroff 5 \
	soft_clashes 10  backbone_clashes 2 \
	break 40  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	constraints 10 \
	hbond_geom 1 \
	hbond_geom_backbone 1 \
	hbond_geom_beta 5 \
	hbond_geom_beta_pair 10

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5

// For comparative modeling, increase weight of break and hbond_geom...

// put any constraints here, such as helix constraints, strand constraints,
//	sheet constraints, ssbonds, hbonds, or just arbitrary pairs of atoms.

# include T0222.t2k.dssp-ehl2.constraints
# include T0222.t2k.dssp-ebghstl.constraints
# include T0222.t2k.stride-ebghtl.constraints
# include T0222.t2k.str2.constraints
# include T0222.t2k.alpha.constraints
# include T0222.t2k.bys.constraints

include T0222.t04.dssp-ehl2.constraints
include T0222.t04.dssp-ebghstl.constraints
include T0222.t04.stride-ebghtl.constraints
include T0222.t04.str2.constraints
include T0222.t04.alpha.constraints
include T0222.t04.bys.constraints

# the best constraints money can buy

SheetConstraint F4 I6   	V11  K9  	hbond F4 	10.0 # s1a,s1b
# fromm whole try9. I have replaced the bonds for s2||s8 and s2||sb2 from try8
# SheetConstraint F18  A21	L232 K235	hbond I233	10.0 # s2||s8
# SheetConstraint I19  E22	A48  F51	hbond I21	10.0 # s2||s2b
SheetConstraint I19 E22 	V49 Q52	  	hbond A21	15.
SheetConstraint K231 I233  	V17 I19  	hbond K231	15.
SheetConstraint V49  Q52	I104 S107	hbond F51	15.0 # s2b||s3
SheetConstraint F105 T108	A125 I128	hbond L106	15.0 # s3||s4
SheetConstraint A125 A129	P148 S152	hbond F126	15.0 # s4||s5
SheetConstraint P148 T153	Q175 H180	hbond M149	15.0 # s5||s6
SheetConstraint A177 H180	E206 I209	hbond I178	15.0 # s6||s7
SheetConstraint A207 G210	K231 E234	hbond I209	15.0 # s7||s8

# from whole try8 (commented out but used for double checking
# SheetConstraint I19 E22 	V49 Q52	  	hbond A21	15.
# SheetConstraint F51 F54 	I104 S107  	hbond F51	15.
# SheetConstraint F105 T108  	A125 I128  	hbond L106	15.
# SheetConstraint A125 A129  	P148 S152  	hbond F126	15.
# SheetConstraint M149 T153  	I176 H180  	hbond M149	15.
# SheetConstraint I176 H180	A207 F211	hbond I176	15.
# SheetConstraint V208 S212	A230 E234	hbond I209	15.
# SheetConstraint K231 I233  	V17 I19  	hbond K231	15.

# from try10
Constraint H236.ND1	H214.ND1	-10 4.0 7.0	1.0
Constraint D247.CG	H214.ND1	-10 4.0 10.0	1.0