CreatePredAlphaCost pred_alpha2k alpha11 T0221.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0221.t04.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 9 near_backbone 3 way_back 3 dry5 10 dry6.5 20 dry8 9 dry12 4 \
	phobic_fit 4 \
	sidechain 7 \
	bystroff 5 \
	soft_clashes 50  backbone_clashes 2 \
	break 100  \
	pred_alpha2k 3 \
	pred_alpha04 3 \
	hbond_geom 0.1 \
	hbond_geom_backbone 0.2

#	constraints 2 \

# no beta, so hbond_geom_beta_pair turned off
#	hbond_geom_beta 0.4 \
#	hbond_geom_beta_pair 1

// Add the following for extra-cellular proteins:
#	known_ssbond 0.5	# and put ssbond command in constraints file
#	maybe_ssbond 0.5


## include T0221.t2k.dssp-ehl2.constraints
## include T0221.t2k.dssp-ebghstl.constraints
## include T0221.t2k.stride-ebghtl.constraints
## include T0221.t2k.str2.constraints
## include T0221.t2k.alpha.constraints
## include T0221.t2k.bys.constraints

## include T0221.t04.dssp-ehl2.constraints
## include T0221.t04.dssp-ebghstl.constraints
## include T0221.t04.stride-ebghtl.constraints
## include T0221.t04.str2.constraints
## include T0221.t04.alpha.constraints
## include T0221.t04.bys.constraints