# TARGET T0221 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0221.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 658 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.041 0.006 0.024 0.041 0.448 0.440 2 K 0.081 0.047 0.012 0.027 0.251 0.582 3 T 0.089 0.066 0.005 0.044 0.172 0.623 4 I 0.071 0.015 0.009 0.065 0.228 0.611 5 Q 0.038 0.009 0.045 0.317 0.300 0.292 6 P 0.020 0.004 0.038 0.400 0.318 0.219 7 C 0.009 0.003 0.027 0.396 0.300 0.265 8 S 0.008 0.010 0.016 0.483 0.162 0.321 9 V 0.003 0.003 0.019 0.554 0.119 0.303 10 E 0.001 0.001 0.026 0.796 0.046 0.130 11 D 0.001 0.001 0.046 0.898 0.025 0.030 12 I 0.001 0.001 0.037 0.932 0.018 0.012 13 Q 0.001 0.001 0.018 0.957 0.015 0.009 14 S 0.001 0.001 0.011 0.954 0.017 0.019 15 W 0.001 0.001 0.009 0.975 0.008 0.008 16 L 0.001 0.001 0.004 0.986 0.003 0.005 17 I 0.001 0.001 0.001 0.998 0.001 0.001 18 D 0.001 0.001 0.001 0.997 0.002 0.001 19 Q 0.001 0.001 0.001 0.998 0.001 0.001 20 F 0.001 0.001 0.001 0.997 0.002 0.001 21 A 0.001 0.001 0.001 0.991 0.007 0.001 22 Q 0.001 0.001 0.002 0.981 0.013 0.003 23 Q 0.001 0.001 0.004 0.976 0.012 0.008 24 L 0.001 0.001 0.005 0.912 0.020 0.062 25 D 0.001 0.001 0.002 0.015 0.077 0.905 26 V 0.004 0.005 0.002 0.004 0.119 0.867 27 D 0.017 0.009 0.016 0.008 0.280 0.671 28 P 0.003 0.002 0.821 0.018 0.124 0.033 29 D 0.005 0.002 0.818 0.017 0.119 0.038 30 D 0.013 0.004 0.797 0.021 0.109 0.057 31 I 0.051 0.029 0.052 0.038 0.179 0.651 32 D 0.032 0.078 0.023 0.020 0.612 0.235 33 M 0.017 0.008 0.047 0.106 0.721 0.102 34 E 0.009 0.002 0.026 0.080 0.810 0.073 35 E 0.019 0.017 0.020 0.213 0.635 0.096 36 S 0.064 0.022 0.019 0.400 0.188 0.308 37 F 0.049 0.017 0.092 0.634 0.142 0.066 38 D 0.022 0.004 0.141 0.690 0.101 0.043 39 N 0.009 0.003 0.111 0.780 0.066 0.032 40 Y 0.003 0.002 0.033 0.827 0.052 0.083 41 D 0.003 0.002 0.002 0.064 0.079 0.850 42 L 0.007 0.006 0.003 0.107 0.127 0.750 43 N 0.019 0.007 0.006 0.274 0.152 0.542 44 S 0.031 0.009 0.010 0.755 0.066 0.129 45 S 0.011 0.001 0.005 0.956 0.010 0.016 46 K 0.005 0.001 0.004 0.980 0.005 0.005 47 A 0.004 0.001 0.003 0.985 0.004 0.004 48 L 0.001 0.001 0.001 0.995 0.002 0.002 49 I 0.001 0.001 0.001 0.993 0.003 0.002 50 L 0.001 0.001 0.001 0.992 0.002 0.004 51 L 0.001 0.001 0.001 0.998 0.001 0.001 52 G 0.001 0.001 0.001 0.995 0.003 0.002 53 R 0.001 0.001 0.001 0.997 0.002 0.001 54 L 0.001 0.001 0.001 0.995 0.003 0.001 55 E 0.001 0.001 0.002 0.992 0.006 0.001 56 K 0.001 0.001 0.003 0.984 0.010 0.003 57 W 0.001 0.001 0.003 0.980 0.009 0.008 58 L 0.001 0.001 0.002 0.938 0.010 0.048 59 G 0.001 0.001 0.001 0.013 0.033 0.953 60 K 0.011 0.001 0.001 0.016 0.057 0.914 61 E 0.145 0.013 0.002 0.036 0.053 0.751 62 L 0.290 0.092 0.005 0.142 0.058 0.413 63 N 0.138 0.007 0.010 0.239 0.054 0.552 64 P 0.014 0.001 0.149 0.778 0.026 0.033 65 V 0.031 0.002 0.211 0.701 0.036 0.018 66 L 0.030 0.001 0.212 0.689 0.050 0.018 67 I 0.037 0.004 0.148 0.673 0.083 0.054 68 F 0.057 0.021 0.128 0.632 0.111 0.052 69 N 0.038 0.001 0.065 0.581 0.159 0.157 70 Y 0.028 0.001 0.010 0.260 0.214 0.487 71 P 0.014 0.016 0.005 0.058 0.163 0.745 72 T 0.024 0.026 0.005 0.145 0.100 0.700 73 I 0.001 0.001 0.014 0.960 0.016 0.009 74 A 0.001 0.001 0.020 0.952 0.022 0.007 75 Q 0.001 0.001 0.039 0.938 0.021 0.003 76 L 0.001 0.001 0.021 0.948 0.024 0.005 77 A 0.001 0.001 0.007 0.967 0.019 0.006 78 K 0.001 0.001 0.005 0.954 0.028 0.012 79 R 0.001 0.001 0.006 0.964 0.020 0.009 80 L 0.001 0.001 0.010 0.941 0.036 0.012 81 G 0.001 0.001 0.019 0.881 0.071 0.026 82 E 0.002 0.001 0.034 0.818 0.103 0.043 83 L 0.002 0.001 0.036 0.667 0.119 0.174 84 Y 0.004 0.007 0.017 0.353 0.078 0.540 85 L 0.001 0.001 0.002 0.014 0.032 0.951