# TARGET T0221 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0221.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 658 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.016 0.458 0.004 0.074 0.129 0.001 0.001 0.004 0.108 0.178 0.004 0.024 2 K 0.001 0.036 0.432 0.002 0.047 0.064 0.001 0.001 0.014 0.104 0.281 0.006 0.012 3 T 0.001 0.006 0.771 0.001 0.005 0.019 0.001 0.001 0.008 0.167 0.007 0.011 0.005 4 I 0.001 0.010 0.908 0.001 0.006 0.020 0.001 0.001 0.011 0.026 0.009 0.001 0.008 5 Q 0.001 0.014 0.341 0.001 0.071 0.257 0.001 0.001 0.006 0.134 0.171 0.003 0.004 6 P 0.001 0.007 0.181 0.001 0.105 0.305 0.001 0.001 0.003 0.095 0.300 0.001 0.002 7 C 0.001 0.003 0.462 0.001 0.050 0.192 0.001 0.001 0.004 0.240 0.040 0.006 0.003 8 S 0.001 0.010 0.604 0.001 0.021 0.260 0.001 0.001 0.007 0.053 0.036 0.001 0.009 9 V 0.001 0.005 0.116 0.001 0.024 0.787 0.001 0.001 0.003 0.035 0.029 0.001 0.001 10 E 0.001 0.001 0.022 0.001 0.017 0.916 0.001 0.001 0.001 0.028 0.015 0.001 0.001 11 D 0.001 0.001 0.009 0.001 0.010 0.966 0.001 0.001 0.001 0.003 0.010 0.001 0.001 12 I 0.001 0.001 0.003 0.001 0.002 0.988 0.001 0.001 0.001 0.002 0.004 0.001 0.001 13 Q 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 S 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 15 W 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 16 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 17 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 D 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 F 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 22 Q 0.001 0.001 0.001 0.001 0.002 0.982 0.001 0.001 0.001 0.001 0.015 0.001 0.001 23 Q 0.001 0.001 0.002 0.001 0.003 0.937 0.001 0.001 0.001 0.004 0.054 0.001 0.001 24 L 0.001 0.001 0.011 0.001 0.003 0.643 0.001 0.001 0.001 0.079 0.262 0.001 0.001 25 D 0.001 0.002 0.193 0.001 0.002 0.082 0.001 0.001 0.001 0.086 0.633 0.001 0.001 26 V 0.001 0.005 0.864 0.001 0.001 0.003 0.001 0.001 0.001 0.121 0.005 0.001 0.001 27 D 0.001 0.006 0.978 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.001 0.001 0.001 28 P 0.001 0.001 0.026 0.001 0.800 0.047 0.001 0.001 0.001 0.028 0.097 0.001 0.001 29 D 0.001 0.001 0.012 0.001 0.732 0.036 0.001 0.001 0.001 0.027 0.192 0.001 0.001 30 D 0.001 0.006 0.071 0.001 0.740 0.033 0.001 0.001 0.014 0.039 0.093 0.001 0.002 31 I 0.001 0.071 0.583 0.001 0.015 0.031 0.001 0.002 0.126 0.119 0.017 0.007 0.027 32 D 0.001 0.071 0.723 0.003 0.008 0.029 0.001 0.001 0.042 0.066 0.013 0.018 0.025 33 M 0.001 0.009 0.062 0.001 0.117 0.426 0.001 0.001 0.003 0.059 0.310 0.001 0.011 34 E 0.001 0.006 0.060 0.005 0.078 0.600 0.001 0.001 0.001 0.028 0.218 0.001 0.002 35 E 0.001 0.004 0.183 0.001 0.108 0.512 0.001 0.001 0.005 0.143 0.035 0.005 0.003 36 S 0.001 0.009 0.134 0.001 0.100 0.598 0.001 0.002 0.006 0.039 0.098 0.001 0.012 37 F 0.002 0.014 0.064 0.001 0.182 0.578 0.002 0.008 0.006 0.029 0.107 0.003 0.004 38 D 0.002 0.008 0.040 0.002 0.178 0.628 0.001 0.004 0.007 0.033 0.091 0.004 0.004 39 N 0.002 0.003 0.053 0.003 0.166 0.512 0.001 0.001 0.004 0.044 0.204 0.004 0.005 40 Y 0.001 0.002 0.037 0.001 0.052 0.299 0.001 0.001 0.002 0.071 0.533 0.001 0.002 41 D 0.001 0.003 0.079 0.001 0.016 0.092 0.001 0.001 0.003 0.065 0.739 0.001 0.002 42 L 0.001 0.013 0.597 0.001 0.010 0.106 0.001 0.001 0.014 0.191 0.057 0.003 0.007 43 N 0.001 0.007 0.430 0.006 0.009 0.101 0.001 0.001 0.033 0.342 0.056 0.009 0.007 44 S 0.002 0.022 0.131 0.001 0.031 0.585 0.003 0.011 0.070 0.083 0.038 0.003 0.021 45 S 0.005 0.004 0.031 0.006 0.018 0.887 0.004 0.006 0.014 0.007 0.010 0.003 0.006 46 K 0.005 0.001 0.011 0.001 0.015 0.931 0.003 0.006 0.009 0.006 0.005 0.004 0.004 47 A 0.002 0.001 0.004 0.001 0.007 0.972 0.001 0.002 0.004 0.002 0.003 0.001 0.001 48 L 0.003 0.001 0.002 0.001 0.010 0.972 0.001 0.002 0.003 0.002 0.003 0.001 0.001 49 I 0.003 0.001 0.001 0.001 0.005 0.979 0.001 0.001 0.001 0.001 0.006 0.001 0.001 50 L 0.001 0.001 0.001 0.001 0.002 0.982 0.001 0.001 0.001 0.001 0.011 0.001 0.001 51 L 0.001 0.001 0.002 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 52 G 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 53 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 54 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 55 E 0.001 0.001 0.001 0.001 0.002 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 56 K 0.001 0.001 0.001 0.001 0.004 0.971 0.001 0.001 0.001 0.001 0.023 0.001 0.001 57 W 0.001 0.001 0.003 0.001 0.005 0.927 0.001 0.001 0.001 0.004 0.060 0.001 0.001 58 L 0.001 0.001 0.011 0.001 0.007 0.453 0.001 0.001 0.001 0.029 0.498 0.001 0.001 59 G 0.001 0.001 0.103 0.002 0.012 0.019 0.001 0.001 0.002 0.039 0.822 0.001 0.001 60 K 0.001 0.011 0.672 0.001 0.008 0.010 0.001 0.001 0.009 0.232 0.031 0.008 0.018 61 E 0.001 0.036 0.798 0.002 0.004 0.004 0.001 0.001 0.026 0.052 0.013 0.008 0.056 62 L 0.001 0.070 0.679 0.001 0.002 0.007 0.001 0.001 0.030 0.142 0.003 0.054 0.012 63 N 0.001 0.016 0.879 0.002 0.003 0.010 0.001 0.001 0.014 0.042 0.004 0.001 0.029 64 P 0.001 0.002 0.054 0.003 0.252 0.423 0.001 0.001 0.003 0.048 0.209 0.001 0.003 65 V 0.001 0.002 0.039 0.003 0.274 0.474 0.001 0.001 0.008 0.032 0.158 0.002 0.004 66 L 0.001 0.003 0.036 0.001 0.345 0.536 0.001 0.002 0.014 0.014 0.038 0.004 0.006 67 I 0.003 0.008 0.058 0.003 0.190 0.586 0.001 0.002 0.019 0.034 0.077 0.002 0.016 68 F 0.004 0.024 0.094 0.003 0.196 0.258 0.003 0.001 0.018 0.062 0.312 0.016 0.009 69 N 0.006 0.012 0.160 0.007 0.053 0.091 0.001 0.001 0.011 0.153 0.483 0.002 0.021 70 Y 0.001 0.009 0.535 0.002 0.012 0.022 0.001 0.001 0.007 0.304 0.073 0.026 0.009 71 P 0.001 0.085 0.584 0.001 0.005 0.010 0.001 0.001 0.003 0.237 0.045 0.004 0.026 72 T 0.001 0.064 0.731 0.001 0.003 0.026 0.001 0.001 0.003 0.146 0.012 0.001 0.014 73 I 0.001 0.001 0.018 0.001 0.006 0.947 0.001 0.001 0.001 0.014 0.015 0.001 0.001 74 A 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 75 Q 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 76 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 K 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 79 R 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.006 0.001 0.001 80 L 0.001 0.001 0.003 0.001 0.001 0.985 0.001 0.001 0.001 0.003 0.007 0.001 0.001 81 G 0.001 0.001 0.003 0.001 0.005 0.980 0.001 0.001 0.001 0.001 0.011 0.001 0.001 82 E 0.001 0.001 0.003 0.001 0.012 0.941 0.001 0.001 0.001 0.005 0.039 0.001 0.001 83 L 0.001 0.001 0.009 0.001 0.012 0.790 0.001 0.001 0.001 0.010 0.179 0.001 0.001 84 Y 0.001 0.006 0.060 0.001 0.007 0.667 0.001 0.001 0.002 0.016 0.241 0.001 0.001 85 L 0.001 0.002 0.623 0.001 0.011 0.267 0.001 0.001 0.001 0.049 0.044 0.002 0.001