# TARGET T0221 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0221.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 93.119 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.218 0.108 0.112 0.446 0.029 0.016 0.040 0.010 0.018 0.002 0.001 2 K 0.135 0.093 0.130 0.083 0.046 0.042 0.397 0.030 0.029 0.015 0.001 3 T 0.156 0.281 0.379 0.079 0.033 0.035 0.007 0.002 0.023 0.003 0.001 4 I 0.187 0.117 0.493 0.095 0.023 0.050 0.012 0.003 0.014 0.003 0.003 5 Q 0.078 0.190 0.573 0.010 0.042 0.020 0.013 0.002 0.064 0.007 0.001 6 P 0.332 0.017 0.553 0.031 0.003 0.019 0.002 0.003 0.002 0.003 0.036 7 C 0.241 0.137 0.368 0.049 0.126 0.018 0.017 0.015 0.015 0.013 0.001 8 S 0.140 0.098 0.542 0.038 0.038 0.097 0.006 0.005 0.020 0.011 0.005 9 V 0.904 0.018 0.021 0.040 0.004 0.007 0.002 0.001 0.003 0.001 0.001 10 E 0.968 0.003 0.008 0.015 0.001 0.002 0.001 0.001 0.001 0.001 0.001 11 D 0.979 0.001 0.003 0.011 0.001 0.003 0.001 0.001 0.001 0.001 0.001 12 I 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 W 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 D 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 Q 0.981 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 L 0.173 0.001 0.002 0.823 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 D 0.006 0.001 0.002 0.017 0.001 0.008 0.952 0.011 0.002 0.001 0.001 26 V 0.016 0.514 0.347 0.032 0.027 0.047 0.001 0.001 0.016 0.001 0.001 27 D 0.002 0.054 0.600 0.001 0.017 0.246 0.001 0.001 0.078 0.001 0.001 28 P 0.951 0.001 0.007 0.036 0.001 0.002 0.001 0.001 0.001 0.001 0.001 29 D 0.885 0.003 0.014 0.095 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 D 0.126 0.004 0.013 0.838 0.002 0.004 0.007 0.002 0.005 0.001 0.001 31 I 0.040 0.163 0.630 0.067 0.016 0.061 0.006 0.001 0.015 0.001 0.001 32 D 0.008 0.148 0.509 0.015 0.075 0.170 0.006 0.001 0.063 0.004 0.001 33 M 0.905 0.006 0.015 0.065 0.002 0.003 0.002 0.001 0.001 0.001 0.001 34 E 0.783 0.008 0.026 0.169 0.001 0.004 0.001 0.003 0.003 0.001 0.001 35 E 0.726 0.038 0.118 0.072 0.009 0.008 0.009 0.004 0.015 0.002 0.001 36 S 0.803 0.011 0.125 0.022 0.004 0.010 0.007 0.006 0.003 0.007 0.003 37 F 0.920 0.006 0.013 0.045 0.002 0.005 0.003 0.002 0.003 0.001 0.001 38 D 0.967 0.006 0.009 0.014 0.001 0.002 0.001 0.001 0.001 0.001 0.001 39 N 0.685 0.009 0.013 0.265 0.003 0.009 0.006 0.001 0.006 0.001 0.001 40 Y 0.134 0.046 0.084 0.680 0.006 0.012 0.026 0.002 0.009 0.001 0.001 41 D 0.025 0.010 0.017 0.038 0.013 0.038 0.784 0.042 0.023 0.010 0.001 42 L 0.210 0.242 0.251 0.099 0.069 0.072 0.016 0.008 0.023 0.011 0.001 43 N 0.338 0.076 0.229 0.104 0.027 0.159 0.017 0.004 0.038 0.007 0.001 44 S 0.966 0.003 0.004 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 S 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 K 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 L 0.985 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 L 0.990 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 G 0.994 0.001 0.001 0.002 0.001 0.001 0.001 0.002 0.001 0.001 0.001 53 R 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 L 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 E 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 K 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 W 0.980 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.460 0.001 0.006 0.531 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 G 0.075 0.001 0.002 0.023 0.001 0.001 0.458 0.422 0.001 0.018 0.001 60 K 0.192 0.195 0.518 0.040 0.014 0.026 0.003 0.001 0.010 0.001 0.001 61 E 0.142 0.066 0.545 0.071 0.005 0.133 0.013 0.002 0.015 0.001 0.008 62 L 0.034 0.488 0.362 0.027 0.028 0.028 0.003 0.001 0.029 0.001 0.001 63 N 0.018 0.125 0.620 0.002 0.017 0.118 0.012 0.001 0.085 0.002 0.001 64 P 0.659 0.031 0.237 0.024 0.006 0.029 0.001 0.002 0.002 0.001 0.008 65 V 0.802 0.081 0.033 0.052 0.009 0.009 0.002 0.001 0.011 0.001 0.001 66 L 0.385 0.231 0.293 0.028 0.014 0.033 0.001 0.001 0.013 0.001 0.001 67 I 0.484 0.247 0.077 0.111 0.012 0.037 0.005 0.001 0.025 0.001 0.001 68 F 0.166 0.282 0.237 0.059 0.172 0.042 0.016 0.004 0.016 0.004 0.001 69 N 0.143 0.040 0.036 0.693 0.009 0.031 0.028 0.005 0.015 0.001 0.001 70 Y 0.018 0.444 0.209 0.005 0.121 0.020 0.028 0.001 0.149 0.004 0.001 71 P 0.442 0.010 0.426 0.037 0.001 0.047 0.001 0.001 0.001 0.001 0.034 72 T 0.066 0.215 0.334 0.010 0.211 0.077 0.002 0.002 0.078 0.006 0.001 73 I 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 R 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 L 0.966 0.001 0.001 0.033 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 G 0.984 0.001 0.002 0.008 0.001 0.001 0.003 0.002 0.001 0.001 0.001 82 E 0.979 0.001 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 L 0.957 0.002 0.004 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 Y 0.846 0.007 0.009 0.128 0.001 0.004 0.001 0.001 0.004 0.001 0.001 85 L 0.622 0.047 0.101 0.156 0.007 0.033 0.018 0.003 0.012 0.002 0.001