# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnyA 91 1.26e-12 1dnyA a.28.1.2 16934 1l0iA 78 1.26e-08 a.28.1.1 77643 1klpA 115 3.99e-08 a.28.1.1 72721 1f80D 81 2.67e-07 1acp a.28.1.1 59686 1acp 77 1.80e-06 1acp a.28.1.1 16931 2af8 86 1.26e-05 2af8 a.28.1.1 16933 1af8 86 1.99e-05 2af8 a.28.1.1 16932 1dv5A 80 2.74e-03 1dv5A a.28.1.3 59139 1gd0A 122 1.22e+00 1dptA d.80.1.3 39834 1pjr 724 1.41e+00 1pjr c.37.1.19 32391 c.37.1.19 32392 1orrA 347 1.46e+00 1mfiA 114 1.86e+00 1dptA d.80.1.3 39856 1e8xA 961 2.50e+00 1e8xA a.118.1.6 19148 b.7.1.1 23183 d.15.1.5 37631 d.144.1.4 41711 1jj2W 91 2.59e+00 1ffkU d.29.1.1 63108 1lylA 504 2.76e+00 1lylA b.40.4.1 25261 d.104.1.1 40717 1i4nA 251 3.40e+00 c.1.2.4 71114 1qgrA 876 4.55e+00 1qgrA a.118.1.1 19119 1l4zB 136 5.02e+00 d.15.5.1 77704 1o6vA 466 5.38e+00 b.1.18.15 81099 c.10.2.1 81100 1e1oA 504 5.73e+00 1lylA b.40.4.1 25258 d.104.1.1 40714 1fo1A 271 5.90e+00 1fo1A c.10.2.3 30869 d.58.7.2 39213 1nz0A 118 6.11e+00 d.14.1.2 86433 1vom 762 6.51e+00 1lvk b.34.3.1 24577 c.37.1.9 32174 1dptA 117 6.62e+00 1dptA d.80.1.3 39862 1o6sA 466 6.66e+00 b.1.18.15 81094 c.10.2.1 81095 2pcdM 238 7.10e+00 3pchM b.3.6.1 22760 3pcgM 238 8.29e+00 3pchM b.3.6.1 22742 1j0aA 325 8.42e+00 c.79.1.1 83871 3pchM 238 9.73e+00 3pchM b.3.6.1 22748 1fmaD 81 1.06e+01 1fmaD d.15.3.1 37643 1oc2A 348 1.09e+01 1cby 259 1.12e+01 1cby d.103.1.1 40705 1qlaB 239 1.12e+01 1qlaB a.1.2.1 15679 d.15.4.2 37707 1ccwA 137 1.13e+01 1be1 c.23.6.1 31238 1rovA 857 1.15e+01 1eg5A 384 1.21e+01 1ecxA c.67.1.3 34429 1kepA 348 1.24e+01 c.2.1.2 68536 1ecxA 384 1.30e+01 1ecxA c.67.1.3 34431 1b2sD 90 1.40e+01 1ay7B c.9.1.1 30837 1c0aA 585 1.47e+01 1c0aA b.40.4.1 25246 d.74.4.1 39731 d.104.1.1 40767 1ffkU 91 1.48e+01 1ffkU d.29.1.1 38458 1v32A 101 1.54e+01 1qhhA 167 1.59e+01 1pjr c.37.1.19 32393 1l4dB 122 1.65e+01 d.15.5.1 77684 1nxjA 183 1.70e+01 c.8.7.1 86382 1iqqA 200 1.76e+01 d.124.1.1 66274 1lnh 857 1.76e+01 1yge a.119.1.1 19237 b.12.1.1 23637 1o4vA 183 1.81e+01 c.23.8.1 86628 1b1a 137 1.86e+01 1be1 c.23.6.1 31242 1i50J 70 1.89e+01 a.4.11.1 61764 1qo2A 241 2.01e+01 1qo2A c.1.2.1 28533 1r6dA 337 2.11e+01 1e8yA 966 2.13e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1ku1A 230 2.13e+01 a.118.3.1 72996 1hfoA 113 2.22e+01 d.80.1.3 61006 1fm0D 81 2.27e+01 1fmaD d.15.3.1 37642 1qjbA 245 2.32e+01 1qjaA a.118.7.1 19202 1be1 137 2.47e+01 1be1 c.23.6.1 31237 1prgA 270 2.68e+01 2prgA a.123.1.1 19314 1br2A 791 2.70e+01 1lvk b.34.3.1 24558 c.37.1.9 32155 2ki5A 366 2.70e+01 1qhiA c.37.1.1 31862 1jceA 344 2.75e+01 c.55.1.1 62876 c.55.1.1 62877 1jflA 228 2.76e+01 c.78.2.1 71656 c.78.2.1 71657 3vtk 343 2.83e+01 1qhiA c.37.1.1 31884 1ek6A 348 2.87e+01 1xel c.2.1.2 29800 1div 149 2.88e+01 1div d.99.1.1 40692 d.100.1.1 40693 1h67A 108 2.92e+01 a.40.1.1 65643 1qhiA 366 2.94e+01 1qhiA c.37.1.1 31860 1by3A 714 2.99e+01 1by5A f.4.3.3 43801 1ka2A 499 2.99e+01 d.92.1.5 77305 1gl2B 65 3.01e+01 h.1.15.1 65279 1gr8A 412 3.01e+01 1ockA 412 3.01e+01 c.117.1.1 86802 1i3kA 348 3.06e+01 1xel c.2.1.2 61595 1jcfA 344 3.15e+01 c.55.1.1 62878 c.55.1.1 62879 1d5wC 126 3.16e+01 1dbwA c.23.1.1 31101 2prgA 271 3.26e+01 2prgA a.123.1.1 19311 1ay7B 89 3.27e+01 1ay7B c.9.1.1 30836 1vi1A 345 3.29e+01 1knvA 293 3.37e+01 c.52.1.7 68707 1n3kA 130 3.39e+01 a.77.1.4 79965 1mqdA 261 3.39e+01 c.94.1.1 85049 1m5eA 263 3.44e+01 c.94.1.1 78642 1dixA 208 3.46e+01 1bk7A d.124.1.1 41122 1qqrA 138 3.50e+01 1bmlC d.15.5.1 37721 1kimA 366 3.51e+01 1qhiA c.37.1.1 31864 1bolA 222 3.57e+01 1bolA d.124.1.1 41120 1s3eA 520 3.60e+01 1g8iA 190 3.63e+01 1rec a.39.1.5 60363 1e7uA 961 3.63e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1azo 232 3.64e+01 1azo c.52.1.14 33329 1dx8A 70 3.67e+01 1rb9 g.41.5.1 45243 1stfI 98 3.72e+01 1stfI d.17.1.2 38006 1jr2A 286 3.88e+01 c.113.1.1 67111