# TARGET T0221 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0221.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 338.336 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.016 0.805 0.002 0.004 0.010 0.001 0.001 0.003 0.117 0.015 0.011 0.016 2 K 0.001 0.028 0.800 0.003 0.019 0.015 0.001 0.001 0.003 0.051 0.052 0.005 0.024 3 T 0.001 0.027 0.690 0.003 0.023 0.015 0.001 0.001 0.005 0.134 0.067 0.019 0.015 4 I 0.001 0.015 0.678 0.003 0.030 0.015 0.001 0.001 0.004 0.175 0.054 0.005 0.020 5 Q 0.001 0.006 0.620 0.002 0.016 0.013 0.001 0.001 0.004 0.263 0.059 0.011 0.006 6 P 0.001 0.013 0.755 0.001 0.015 0.012 0.001 0.001 0.005 0.105 0.065 0.003 0.027 7 C 0.001 0.032 0.701 0.001 0.007 0.011 0.001 0.001 0.006 0.194 0.021 0.022 0.005 8 S 0.001 0.017 0.897 0.001 0.002 0.015 0.001 0.001 0.003 0.045 0.005 0.001 0.015 9 V 0.001 0.001 0.044 0.001 0.021 0.910 0.001 0.001 0.001 0.007 0.017 0.001 0.001 10 E 0.001 0.001 0.002 0.001 0.007 0.982 0.001 0.001 0.001 0.002 0.006 0.001 0.001 11 D 0.001 0.001 0.002 0.001 0.004 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 I 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 S 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 W 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 D 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 F 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 22 Q 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.009 0.001 0.001 23 Q 0.001 0.001 0.001 0.001 0.001 0.954 0.001 0.001 0.001 0.001 0.043 0.001 0.001 24 L 0.001 0.002 0.018 0.001 0.004 0.682 0.001 0.001 0.001 0.022 0.272 0.001 0.001 25 D 0.001 0.004 0.096 0.001 0.006 0.029 0.001 0.001 0.001 0.128 0.736 0.001 0.001 26 V 0.001 0.016 0.648 0.001 0.002 0.006 0.001 0.001 0.001 0.292 0.033 0.001 0.001 27 D 0.001 0.017 0.891 0.001 0.002 0.001 0.001 0.001 0.001 0.082 0.005 0.001 0.001 28 P 0.001 0.003 0.039 0.001 0.490 0.049 0.001 0.001 0.001 0.015 0.401 0.001 0.001 29 D 0.001 0.005 0.030 0.001 0.445 0.037 0.001 0.001 0.005 0.079 0.394 0.002 0.001 30 D 0.001 0.011 0.088 0.004 0.550 0.059 0.001 0.001 0.013 0.094 0.174 0.001 0.006 31 I 0.001 0.121 0.321 0.001 0.023 0.076 0.001 0.001 0.030 0.345 0.034 0.041 0.008 32 D 0.001 0.054 0.777 0.001 0.011 0.038 0.001 0.001 0.014 0.059 0.018 0.002 0.025 33 M 0.001 0.007 0.049 0.001 0.184 0.559 0.001 0.001 0.001 0.014 0.183 0.001 0.002 34 E 0.001 0.005 0.064 0.001 0.154 0.563 0.001 0.001 0.001 0.025 0.183 0.001 0.002 35 E 0.001 0.007 0.112 0.001 0.152 0.537 0.001 0.001 0.002 0.084 0.102 0.002 0.001 36 S 0.001 0.012 0.138 0.001 0.122 0.587 0.001 0.001 0.002 0.036 0.099 0.001 0.003 37 F 0.001 0.012 0.026 0.001 0.196 0.610 0.001 0.002 0.002 0.028 0.121 0.001 0.001 38 D 0.001 0.006 0.013 0.001 0.184 0.622 0.001 0.002 0.001 0.015 0.155 0.001 0.001 39 N 0.001 0.005 0.050 0.001 0.142 0.604 0.001 0.003 0.001 0.030 0.161 0.001 0.002 40 Y 0.001 0.008 0.054 0.001 0.049 0.338 0.001 0.003 0.003 0.091 0.452 0.001 0.001 41 D 0.001 0.007 0.134 0.003 0.015 0.045 0.001 0.001 0.002 0.138 0.654 0.002 0.001 42 L 0.001 0.034 0.738 0.002 0.007 0.029 0.001 0.001 0.005 0.105 0.055 0.007 0.015 43 N 0.001 0.069 0.404 0.003 0.015 0.073 0.001 0.002 0.013 0.252 0.143 0.011 0.014 44 S 0.001 0.006 0.085 0.002 0.025 0.590 0.001 0.001 0.005 0.063 0.215 0.001 0.005 45 S 0.001 0.002 0.021 0.001 0.006 0.943 0.001 0.001 0.002 0.012 0.011 0.001 0.001 46 K 0.001 0.001 0.013 0.001 0.002 0.975 0.001 0.001 0.001 0.004 0.003 0.001 0.001 47 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 L 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 52 G 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.008 0.001 0.001 53 R 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 54 L 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 55 E 0.001 0.001 0.001 0.001 0.004 0.990 0.001 0.001 0.001 0.001 0.002 0.001 0.001 56 K 0.001 0.001 0.001 0.001 0.006 0.982 0.001 0.001 0.001 0.001 0.010 0.001 0.001 57 W 0.001 0.001 0.002 0.001 0.006 0.956 0.001 0.001 0.001 0.001 0.034 0.001 0.001 58 L 0.001 0.001 0.014 0.001 0.004 0.615 0.001 0.001 0.001 0.012 0.353 0.001 0.001 59 G 0.001 0.002 0.033 0.003 0.010 0.071 0.001 0.001 0.001 0.058 0.820 0.001 0.001 60 K 0.001 0.006 0.537 0.001 0.016 0.070 0.001 0.002 0.014 0.196 0.127 0.015 0.015 61 E 0.002 0.048 0.637 0.001 0.013 0.030 0.002 0.002 0.043 0.085 0.048 0.010 0.077 62 L 0.003 0.046 0.671 0.004 0.006 0.017 0.004 0.002 0.037 0.128 0.015 0.036 0.031 63 N 0.001 0.012 0.842 0.016 0.007 0.008 0.001 0.001 0.020 0.043 0.010 0.009 0.031 64 P 0.002 0.002 0.114 0.019 0.360 0.299 0.002 0.004 0.036 0.060 0.076 0.005 0.019 65 V 0.008 0.004 0.042 0.054 0.222 0.374 0.009 0.019 0.063 0.113 0.058 0.019 0.016 66 L 0.013 0.007 0.014 0.001 0.112 0.340 0.018 0.243 0.176 0.013 0.023 0.015 0.024 67 I 0.018 0.015 0.018 0.003 0.009 0.307 0.027 0.361 0.199 0.003 0.017 0.005 0.017 68 F 0.031 0.024 0.178 0.011 0.021 0.344 0.028 0.084 0.105 0.032 0.088 0.034 0.020 69 N 0.006 0.008 0.121 0.003 0.021 0.194 0.004 0.012 0.057 0.195 0.326 0.007 0.045 70 Y 0.001 0.006 0.374 0.003 0.006 0.016 0.001 0.001 0.007 0.460 0.116 0.008 0.003 71 P 0.001 0.045 0.579 0.001 0.003 0.010 0.001 0.001 0.004 0.332 0.021 0.001 0.005 72 T 0.001 0.020 0.663 0.001 0.002 0.030 0.001 0.001 0.001 0.270 0.012 0.001 0.002 73 I 0.001 0.001 0.002 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.003 0.001 0.001 74 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.003 0.001 0.001 79 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 80 L 0.001 0.001 0.003 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.006 0.001 0.001 81 G 0.001 0.001 0.005 0.001 0.019 0.948 0.001 0.001 0.001 0.006 0.021 0.001 0.001 82 E 0.001 0.001 0.004 0.001 0.027 0.899 0.001 0.001 0.001 0.005 0.066 0.001 0.001 83 L 0.001 0.001 0.007 0.001 0.016 0.800 0.001 0.001 0.001 0.006 0.170 0.001 0.001 84 Y 0.001 0.005 0.214 0.001 0.013 0.431 0.001 0.001 0.001 0.051 0.283 0.001 0.001 85 L 0.001 0.004 0.857 0.001 0.008 0.049 0.001 0.001 0.001 0.059 0.020 0.001 0.001