# TARGET T0221 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0221.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 338.336 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.002 0.002 0.001 0.991 2 K 0.015 0.022 0.003 0.011 0.008 0.012 0.929 3 T 0.023 0.019 0.011 0.012 0.110 0.025 0.800 4 I 0.018 0.009 0.016 0.007 0.096 0.036 0.818 5 Q 0.019 0.016 0.014 0.010 0.108 0.021 0.814 6 P 0.011 0.009 0.036 0.040 0.129 0.045 0.732 7 C 0.013 0.052 0.042 0.080 0.178 0.054 0.581 8 S 0.008 0.034 0.046 0.158 0.086 0.044 0.623 9 V 0.001 0.001 0.049 0.875 0.007 0.022 0.046 10 E 0.001 0.001 0.014 0.971 0.004 0.006 0.004 11 D 0.001 0.001 0.006 0.988 0.001 0.002 0.002 12 I 0.001 0.001 0.001 0.997 0.001 0.001 0.001 13 Q 0.001 0.001 0.001 0.999 0.001 0.001 0.001 14 S 0.001 0.001 0.001 0.999 0.001 0.001 0.001 15 W 0.001 0.001 0.001 0.999 0.001 0.001 0.001 16 L 0.001 0.001 0.001 0.998 0.001 0.002 0.001 17 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 18 D 0.001 0.001 0.001 0.998 0.001 0.001 0.001 19 Q 0.001 0.001 0.001 0.995 0.001 0.005 0.001 20 F 0.001 0.001 0.001 0.994 0.001 0.005 0.001 21 A 0.001 0.001 0.001 0.996 0.001 0.002 0.001 22 Q 0.001 0.001 0.001 0.989 0.001 0.010 0.001 23 Q 0.001 0.001 0.004 0.940 0.002 0.050 0.003 24 L 0.001 0.002 0.012 0.597 0.031 0.337 0.019 25 D 0.005 0.008 0.010 0.034 0.074 0.700 0.169 26 V 0.009 0.025 0.002 0.004 0.135 0.008 0.818 27 D 0.006 0.006 0.002 0.001 0.019 0.002 0.964 28 P 0.001 0.001 0.807 0.069 0.006 0.101 0.015 29 D 0.001 0.001 0.747 0.079 0.018 0.146 0.008 30 D 0.004 0.006 0.707 0.092 0.037 0.097 0.057 31 I 0.031 0.095 0.026 0.124 0.216 0.036 0.473 32 D 0.026 0.029 0.017 0.021 0.026 0.021 0.860 33 M 0.005 0.004 0.261 0.257 0.017 0.432 0.023 34 E 0.008 0.004 0.235 0.320 0.039 0.354 0.042 35 E 0.026 0.020 0.291 0.165 0.237 0.086 0.175 36 S 0.053 0.048 0.079 0.221 0.122 0.133 0.345 37 F 0.025 0.022 0.204 0.383 0.059 0.149 0.159 38 D 0.021 0.010 0.172 0.419 0.062 0.238 0.078 39 N 0.017 0.009 0.174 0.427 0.071 0.202 0.101 40 Y 0.034 0.015 0.110 0.239 0.142 0.322 0.138 41 D 0.033 0.015 0.044 0.121 0.150 0.411 0.227 42 L 0.066 0.031 0.028 0.143 0.194 0.092 0.446 43 N 0.079 0.049 0.015 0.139 0.108 0.043 0.566 44 S 0.012 0.004 0.024 0.850 0.016 0.022 0.073 45 S 0.001 0.001 0.008 0.984 0.002 0.004 0.002 46 K 0.001 0.001 0.005 0.992 0.001 0.001 0.001 47 A 0.001 0.001 0.002 0.997 0.001 0.001 0.001 48 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 49 I 0.001 0.001 0.001 0.997 0.001 0.002 0.001 50 L 0.001 0.001 0.001 0.993 0.001 0.005 0.001 51 L 0.001 0.001 0.001 0.994 0.001 0.005 0.001 52 G 0.001 0.001 0.001 0.993 0.001 0.006 0.001 53 R 0.001 0.001 0.001 0.995 0.001 0.004 0.001 54 L 0.001 0.001 0.001 0.996 0.001 0.003 0.001 55 E 0.001 0.001 0.001 0.996 0.001 0.002 0.001 56 K 0.001 0.001 0.001 0.990 0.001 0.008 0.001 57 W 0.001 0.001 0.002 0.964 0.001 0.031 0.001 58 L 0.001 0.001 0.005 0.625 0.004 0.359 0.006 59 G 0.002 0.002 0.011 0.062 0.033 0.795 0.095 60 K 0.028 0.007 0.006 0.017 0.136 0.016 0.790 61 E 0.081 0.049 0.009 0.008 0.061 0.015 0.778 62 L 0.069 0.094 0.002 0.009 0.128 0.004 0.695 63 N 0.025 0.007 0.003 0.003 0.023 0.003 0.936 64 P 0.014 0.004 0.350 0.485 0.017 0.069 0.061 65 V 0.020 0.002 0.427 0.449 0.016 0.067 0.018 66 L 0.034 0.005 0.531 0.346 0.008 0.046 0.030 67 I 0.116 0.020 0.166 0.559 0.016 0.072 0.052 68 F 0.165 0.044 0.117 0.211 0.113 0.233 0.117 69 N 0.100 0.017 0.053 0.098 0.174 0.364 0.195 70 Y 0.029 0.007 0.006 0.040 0.436 0.041 0.440 71 P 0.034 0.036 0.003 0.033 0.293 0.028 0.573 72 T 0.021 0.067 0.004 0.071 0.171 0.016 0.649 73 I 0.001 0.001 0.003 0.994 0.001 0.002 0.001 74 A 0.001 0.001 0.001 0.998 0.001 0.001 0.001 75 Q 0.001 0.001 0.001 0.998 0.001 0.001 0.001 76 L 0.001 0.001 0.001 0.998 0.001 0.001 0.001 77 A 0.001 0.001 0.001 0.998 0.001 0.002 0.001 78 K 0.001 0.001 0.001 0.993 0.001 0.007 0.001 79 R 0.001 0.001 0.001 0.986 0.001 0.012 0.001 80 L 0.001 0.001 0.004 0.973 0.001 0.016 0.005 81 G 0.001 0.001 0.009 0.962 0.002 0.025 0.002 82 E 0.001 0.001 0.017 0.892 0.003 0.082 0.006 83 L 0.001 0.001 0.016 0.754 0.010 0.200 0.019 84 Y 0.001 0.005 0.015 0.503 0.028 0.261 0.187 85 L 0.002 0.001 0.007 0.043 0.030 0.037 0.880