# TARGET T0221 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0221.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 338.336 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.139 0.182 0.322 0.075 0.114 0.019 0.045 0.053 0.017 0.032 0.001 2 K 0.170 0.285 0.333 0.066 0.056 0.031 0.021 0.007 0.022 0.009 0.001 3 T 0.152 0.257 0.392 0.070 0.039 0.042 0.014 0.003 0.026 0.004 0.002 4 I 0.175 0.166 0.430 0.103 0.038 0.044 0.012 0.004 0.021 0.003 0.004 5 Q 0.065 0.183 0.593 0.007 0.054 0.015 0.011 0.002 0.058 0.011 0.001 6 P 0.325 0.014 0.514 0.031 0.003 0.022 0.002 0.002 0.002 0.003 0.084 7 C 0.223 0.163 0.318 0.070 0.138 0.020 0.023 0.014 0.021 0.009 0.001 8 S 0.100 0.088 0.589 0.027 0.042 0.100 0.006 0.004 0.023 0.015 0.005 9 V 0.928 0.011 0.014 0.034 0.003 0.005 0.001 0.001 0.002 0.001 0.001 10 E 0.971 0.003 0.007 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 D 0.979 0.001 0.004 0.010 0.001 0.003 0.001 0.001 0.001 0.001 0.001 12 I 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 W 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 D 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 Q 0.988 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 L 0.161 0.001 0.001 0.837 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 D 0.004 0.001 0.001 0.012 0.001 0.005 0.962 0.013 0.002 0.001 0.001 26 V 0.015 0.466 0.395 0.031 0.025 0.052 0.001 0.001 0.015 0.001 0.001 27 D 0.002 0.047 0.622 0.001 0.014 0.246 0.001 0.001 0.065 0.001 0.001 28 P 0.950 0.001 0.008 0.036 0.001 0.002 0.001 0.001 0.001 0.001 0.001 29 D 0.889 0.003 0.013 0.091 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 D 0.123 0.003 0.011 0.842 0.002 0.004 0.008 0.002 0.004 0.001 0.001 31 I 0.043 0.172 0.626 0.059 0.015 0.061 0.006 0.001 0.017 0.001 0.001 32 D 0.010 0.125 0.512 0.017 0.053 0.204 0.007 0.001 0.067 0.003 0.001 33 M 0.899 0.006 0.016 0.070 0.002 0.003 0.002 0.001 0.001 0.001 0.001 34 E 0.783 0.009 0.028 0.167 0.001 0.004 0.001 0.003 0.003 0.001 0.001 35 E 0.717 0.040 0.132 0.062 0.009 0.007 0.009 0.005 0.016 0.002 0.001 36 S 0.809 0.008 0.130 0.017 0.003 0.010 0.006 0.005 0.002 0.006 0.003 37 F 0.941 0.004 0.009 0.034 0.001 0.004 0.002 0.001 0.002 0.001 0.001 38 D 0.978 0.004 0.006 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 N 0.736 0.007 0.010 0.230 0.002 0.006 0.004 0.001 0.004 0.001 0.001 40 Y 0.156 0.040 0.075 0.687 0.005 0.009 0.019 0.002 0.007 0.001 0.001 41 D 0.032 0.009 0.018 0.033 0.013 0.041 0.774 0.043 0.025 0.011 0.001 42 L 0.287 0.216 0.217 0.104 0.050 0.079 0.011 0.006 0.022 0.009 0.001 43 N 0.415 0.064 0.160 0.122 0.022 0.152 0.017 0.004 0.037 0.006 0.001 44 S 0.962 0.003 0.004 0.025 0.001 0.002 0.001 0.001 0.001 0.001 0.001 45 S 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 K 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 L 0.985 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 L 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 G 0.992 0.001 0.001 0.002 0.001 0.001 0.002 0.003 0.001 0.001 0.001 53 R 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 L 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 57 W 0.981 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 58 L 0.385 0.001 0.005 0.607 0.001 0.001 0.001 0.001 0.001 0.001 0.001 59 G 0.045 0.001 0.001 0.014 0.001 0.001 0.550 0.375 0.001 0.014 0.001 60 K 0.152 0.204 0.555 0.032 0.014 0.028 0.003 0.001 0.010 0.001 0.001 61 E 0.128 0.061 0.578 0.059 0.005 0.135 0.011 0.001 0.013 0.001 0.010 62 L 0.036 0.485 0.353 0.030 0.033 0.028 0.003 0.001 0.031 0.001 0.001 63 N 0.020 0.121 0.631 0.002 0.016 0.109 0.012 0.001 0.086 0.002 0.001 64 P 0.622 0.032 0.268 0.026 0.007 0.031 0.001 0.002 0.002 0.001 0.008 65 V 0.780 0.081 0.038 0.065 0.011 0.011 0.002 0.001 0.011 0.001 0.001 66 L 0.318 0.326 0.255 0.030 0.024 0.030 0.001 0.001 0.015 0.001 0.001 67 I 0.393 0.329 0.091 0.095 0.015 0.042 0.005 0.001 0.029 0.001 0.001 68 F 0.123 0.315 0.243 0.052 0.173 0.050 0.015 0.004 0.021 0.003 0.001 69 N 0.150 0.052 0.046 0.645 0.011 0.041 0.030 0.005 0.018 0.002 0.001 70 Y 0.019 0.410 0.197 0.007 0.150 0.024 0.040 0.001 0.143 0.007 0.001 71 P 0.447 0.012 0.408 0.050 0.002 0.045 0.002 0.001 0.001 0.001 0.032 72 T 0.056 0.210 0.320 0.010 0.242 0.076 0.002 0.002 0.076 0.007 0.001 73 I 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 74 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 75 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 R 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 L 0.979 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 G 0.986 0.001 0.002 0.008 0.001 0.001 0.002 0.001 0.001 0.001 0.001 82 E 0.965 0.002 0.004 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 L 0.904 0.003 0.008 0.081 0.001 0.002 0.001 0.001 0.001 0.001 0.001 84 Y 0.593 0.026 0.047 0.285 0.004 0.014 0.008 0.003 0.020 0.001 0.001 85 L 0.506 0.053 0.173 0.130 0.018 0.028 0.053 0.014 0.010 0.014 0.001