# List of top-scoring protein chains for t04-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l0iA 78 6.35e-08 a.28.1.1 77643 1f80D 81 8.86e-07 1acp a.28.1.1 59686 1j0aA 325 1.07e-01 c.79.1.1 83871 1ka2A 499 3.12e-01 d.92.1.5 77305 1p0yA 444 1.26e+00 a.166.1.1 87654 b.85.7.3 87655 1vom 762 1.31e+00 1lvk b.34.3.1 24577 c.37.1.9 32174 1o4vA 183 1.68e+00 c.23.8.1 86628 1j3mA 129 1.95e+00 1clxA 347 2.16e+00 1taxA c.1.8.3 28899 1go3F 107 2.36e+00 a.60.8.2 65407 1kq3A 376 2.49e+00 e.22.1.2 68790 1gu7A 364 2.49e+00 b.35.1.2 83321 c.2.1.1 83322 1cby 259 2.52e+00 1cby d.103.1.1 40705 1v32A 101 2.58e+00 1lssA 140 2.73e+00 c.2.1.9 74246 1ytfB 53 2.73e+00 1ytfB a.32.1.1 16997 1j6oA 268 3.11e+00 c.1.9.12 77088 1mpgA 282 3.13e+00 1mpgA a.96.1.3 18747 d.129.1.2 41296 1h05A 146 3.52e+00 c.23.13.1 76433 1sedA 117 3.55e+00 1jr2A 286 3.97e+00 c.113.1.1 67111 1nh2B 53 4.27e+00 1qczA 169 4.49e+00 1qczA c.23.8.1 31276 1nvpB 57 4.84e+00 1lc5A 364 4.94e+00 c.67.1.1 73827 1viaA 175 4.98e+00 1rqtA 37 5.12e+00 2dhqA 146 5.20e+00 2dhqA c.23.13.1 31382 1mdbA 539 5.22e+00 e.23.1.1 79008 2fokA 579 5.50e+00 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1jqeA 292 5.75e+00 c.66.1.19 71789 1n9lA 109 5.84e+00 d.110.3.6 85468 1oj4A 283 6.18e+00 1eg5A 384 6.26e+00 1ecxA c.67.1.3 34429 2rslA 140 6.66e+00 2rslA c.53.1.1 33345 1b5tA 275 7.34e+00 1b5tA c.1.23.1 29676 1gu2A 124 7.63e+00 a.3.1.1 76348 1gd0A 122 7.89e+00 1dptA d.80.1.3 39834 1fwkA 296 8.05e+00 1fwkA d.14.1.5 37576 d.58.26.1 39398 1h5wA 309 8.29e+00 e.27.1.1 65635 1jj2W 91 8.54e+00 1ffkU d.29.1.1 63108 1fm0D 81 8.60e+00 1fmaD d.15.3.1 37642 1dptA 117 8.74e+00 1dptA d.80.1.3 39862 1h72C 296 8.95e+00 d.14.1.5 60712 d.58.26.1 60713 1a41 234 9.09e+00 1a41 d.163.1.2 42174 1pl8A 356 9.17e+00 1uc2A 481 9.30e+00 1c3cA 429 9.52e+00 1c3cA a.127.1.1 19425 1fiqB 350 9.56e+00 1fiqB d.87.2.1 40229 d.145.1.3 41760 1g87A 614 9.59e+00 a.102.1.2 83275 b.2.2.2 83276 1hn4A 131 9.91e+00 a.133.1.2 65893 1dbwA 126 1.12e+01 1dbwA c.23.1.1 31095 1qi9A 556 1.14e+01 1qhbA a.111.1.2 19053 1p4wA 99 1.18e+01 a.4.6.2 87783 1pb6A 212 1.20e+01 a.4.1.9 88017 a.121.1.1 88018 1ijgA 309 1.23e+01 1fouA e.27.1.1 62493 1cc1S 283 1.28e+01 2frvA e.19.1.1 43313 1azsA 220 1.36e+01 1azsA d.58.29.1 39416 1g8mA 593 1.50e+01 1g8mA c.24.1.3 60371 c.97.2.1 60372 1m6pA 152 1.56e+01 1m6pA b.64.1.1 27519 1mnnA 340 1.57e+01 b.2.5.7 79324 1v7nV 163 1.58e+01 1j3vA 289 1.59e+01 1ryoA 327 1.66e+01 1e5xA 486 1.69e+01 c.79.1.1 59283 1v54D 147 1.85e+01 1a8e 329 1.85e+01 1cb6A c.94.1.2 35888 2occD 147 1.90e+01 1ocrD f.23.1.1 43521 1d1gA 168 1.90e+01 1d1gA c.71.1.1 34889 1otfA 62 1.91e+01 1otfA d.80.1.1 39820 1n3kA 130 1.93e+01 a.77.1.4 79965 1qhfA 240 1.94e+01 1qhfA c.60.1.1 33960 1jhfA 202 2.03e+01 a.4.5.2 63057 b.87.1.1 63058 1jidA 128 2.11e+01 d.201.1.1 66735 1szqA 483 2.11e+01 1gwiA 411 2.13e+01 a.104.1.1 76364 1bolA 222 2.14e+01 1bolA d.124.1.1 41120 1j54A 186 2.14e+01 c.55.3.5 77077 1pyaB 228 2.21e+01 1pyaB 1s0aA 429 2.30e+01 1alo 907 2.31e+01 1alo 1hlrA 907 2.33e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1ebfA 358 2.35e+01 1ebuA c.2.1.3 30033 d.81.1.2 39948 1fo4A 1332 2.36e+01 a.56.1.1 17910 d.15.4.2 37695 d.41.1.1 38586 d.87.2.1 40227 d.133.1.1 41416 d.145.1.3 41758 1uekA 275 2.39e+01 d.14.1.5 88483 d.58.26.5 88484 1b25A 619 2.41e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1vcbA 118 2.46e+01 1vcbA d.15.1.1 37603 1nv8A 284 2.50e+01 c.66.1.30 86224 1i0dA 332 2.54e+01 1pscA c.1.9.3 61487 1hzyA 332 2.55e+01 1pscA c.1.9.3 61468 1lm8B 118 2.62e+01 d.15.1.1 74033 1o4sA 389 2.65e+01 c.67.1.1 86620 1div 149 2.78e+01 1div d.99.1.1 40692 d.100.1.1 40693 1ks9A 291 2.82e+01 a.100.1.7 68857 c.2.1.6 68858 1cxpA 104 2.92e+01 1d2vA a.93.1.2 18695 1d2vA 104 2.92e+01 1d2vA a.93.1.2 18697 1dw0A 112 2.99e+01 1dw0A a.3.1.1 15911 1ireA 204 3.02e+01 d.149.1.1 76769 1nqkA 381 3.12e+01 1lddA 74 3.14e+01 a.4.5.34 73841 1e4iA 447 3.15e+01 1e70M c.1.8.4 59225 1h1dA 221 3.20e+01 c.66.1.1 83452 1lmb3 92 3.24e+01 1lmb3 1stfI 98 3.26e+01 1stfI d.17.1.2 38006 1f6yA 262 3.32e+01 1f6yA c.1.21.2 29673 1d7uA 433 3.33e+01 2dkb c.67.1.4 34439 1bg6 359 3.33e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1gz6A 319 3.36e+01 c.2.1.2 76410 1o50A 157 3.43e+01 1aj2 282 3.49e+01 1aj2 c.1.21.1 29665 1s5lZ 62 3.50e+01 1i50J 70 3.51e+01 a.4.11.1 61764 1lox 662 3.57e+01 1lox a.119.1.2 19238 b.12.1.1 23638 1bu8A 452 3.60e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1se9A 126 3.60e+01 1elqA 390 3.61e+01 1elqA c.67.1.3 34436 1eluA 390 3.61e+01 1elqA c.67.1.3 34434 1te5A 257 3.61e+01 2trcP 217 3.66e+01 1b9yC c.47.1.6 33051 1lngA 87 3.67e+01 d.201.1.1 74045 1e8yA 966 3.67e+01 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1aba 87 3.73e+01 1aba c.47.1.1 32760 1ny6A 267 3.74e+01 1m3qA 317 3.76e+01 1r9lA 309 3.90e+01