# List of top-scoring protein chains for t04-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l0iA 78 2.42e-10 a.28.1.1 77643 1f80D 81 1.23e-07 1acp a.28.1.1 59686 1j0aA 325 1.39e-02 c.79.1.1 83871 1vcbA 118 3.11e-01 1vcbA d.15.1.1 37603 1ks9A 291 3.14e-01 a.100.1.7 68857 c.2.1.6 68858 1lm8B 118 3.25e-01 d.15.1.1 74033 1fwkA 296 3.60e-01 1fwkA d.14.1.5 37576 d.58.26.1 39398 1c3cA 429 3.68e-01 1c3cA a.127.1.1 19425 1eg5A 384 4.57e-01 1ecxA c.67.1.3 34429 1h72C 296 4.82e-01 d.14.1.5 60712 d.58.26.1 60713 1jj2W 91 6.20e-01 1ffkU d.29.1.1 63108 1nv8A 284 6.20e-01 c.66.1.30 86224 1rqtA 37 7.65e-01 1ka2A 499 7.89e-01 d.92.1.5 77305 1nh2B 53 8.18e-01 1oj4A 283 9.03e-01 1jqeA 292 9.32e-01 c.66.1.19 71789 1ytfB 53 9.69e-01 1ytfB a.32.1.1 16997 1mpgA 282 1.04e+00 1mpgA a.96.1.3 18747 d.129.1.2 41296 1cby 259 1.14e+00 1cby d.103.1.1 40705 1lc5A 364 1.15e+00 c.67.1.1 73827 1otfA 62 1.28e+00 1otfA d.80.1.1 39820 1jidA 128 1.29e+00 d.201.1.1 66735 1qi9A 556 1.32e+00 1qhbA a.111.1.2 19053 1j54A 186 1.35e+00 c.55.3.5 77077 1jr2A 286 1.39e+00 c.113.1.1 67111 1clxA 347 1.45e+00 1taxA c.1.8.3 28899 1sedA 117 1.52e+00 1dptA 117 1.58e+00 1dptA d.80.1.3 39862 1uc2A 481 1.61e+00 1n9lA 109 1.68e+00 d.110.3.6 85468 1fm0D 81 1.86e+00 1fmaD d.15.3.1 37642 1lngA 87 1.92e+00 d.201.1.1 74045 1cxpA 104 1.97e+00 1d2vA a.93.1.2 18695 1d2vA 104 1.97e+00 1d2vA a.93.1.2 18697 1o4vA 183 2.01e+00 c.23.8.1 86628 1gd0A 122 2.02e+00 1dptA d.80.1.3 39834 1szqA 483 2.23e+00 3kvt 115 2.25e+00 1t1dA d.42.1.2 38642 1j6wA 175 2.37e+00 1j98A d.185.1.2 62663 1nvpB 57 2.50e+00 1p3wA 404 2.65e+00 c.67.1.3 87752 1qgiA 259 2.72e+00 1qgiA d.2.1.7 37001 1afwA 393 2.79e+00 1afwA c.95.1.1 35900 c.95.1.1 35901 1dd9A 338 2.94e+00 1dd9A e.13.1.1 43254 1rkqA 282 3.05e+00 1h05A 146 3.08e+00 c.23.13.1 76433 1p0yA 444 3.13e+00 a.166.1.1 87654 b.85.7.3 87655 1io7A 368 3.14e+00 1f4tA a.104.1.1 18971 2rslA 140 3.17e+00 2rslA c.53.1.1 33345 1e5xA 486 3.19e+00 c.79.1.1 59283 1h5uA 842 3.25e+00 1a8i c.87.1.4 60655 1o4sA 389 3.26e+00 c.67.1.1 86620 1sra 151 3.44e+00 1sra a.39.1.3 17190 1htjF 210 3.46e+00 1htjF a.91.1.1 61254 1viaA 175 3.63e+00 1dxrC 336 3.66e+00 6prcC a.138.1.2 19670 1oeyA 83 3.75e+00 1hnjA 317 3.84e+00 1hn9A c.95.1.1 35969 c.95.1.1 35970 1kq3A 376 4.08e+00 e.22.1.2 68790 1lddA 74 4.23e+00 a.4.5.34 73841 1or0A 160 4.25e+00 1nbwA 607 4.34e+00 c.8.6.1 80393 c.55.1.6 80394 c.55.1.6 80395 1m3kA 392 4.35e+00 c.95.1.1 78565 c.95.1.1 78566 1hyhA 309 4.35e+00 1hyhA c.2.1.5 30150 d.162.1.1 42117 1qj2B 809 4.36e+00 1qj2B 1m4tA 392 4.37e+00 c.95.1.1 78617 c.95.1.1 78618 1n62B 809 4.49e+00 d.41.1.1 80092 d.133.1.1 80093 1k47A 337 5.03e+00 d.14.1.5 72040 d.58.26.4 72041 1qflA 389 5.16e+00 1afwA c.95.1.1 35908 c.95.1.1 35909 1a8i 842 5.17e+00 1a8i c.87.1.4 35490 1nw3A 416 5.27e+00 c.66.1.31 86288 1b25A 619 5.30e+00 1b25A a.110.1.1 19044 d.152.1.1 41796 1tc5A 194 5.39e+00 1vom 762 5.55e+00 1lvk b.34.3.1 24577 c.37.1.9 32174 1qlmA 316 5.92e+00 1qlmA d.147.1.1 41765 1so2A 420 5.98e+00 1cc1S 283 5.99e+00 2frvA e.19.1.1 43313 1rb9 53 6.12e+00 1rb9 g.41.5.1 45214 1h5wA 309 6.13e+00 e.27.1.1 65635 1n3kA 130 6.21e+00 a.77.1.4 79965 1qhfA 240 6.22e+00 1qhfA c.60.1.1 33960 1bu8A 452 6.27e+00 1gpl b.12.1.2 23647 c.69.1.19 34795 1aisB 200 6.29e+00 1aisB a.74.1.2 18384 a.74.1.2 18385 1bi5A 389 6.30e+00 1bi5A c.95.1.2 35985 c.95.1.2 35986 1i88A 389 6.32e+00 c.95.1.2 66070 c.95.1.2 66071 1gx1A 160 6.33e+00 d.79.5.1 70675 1ofgA 381 6.33e+00 1ofgA c.2.1.3 30064 d.81.1.5 39979 1js3A 486 6.42e+00 c.67.1.6 67215 1h6dA 433 6.45e+00 c.2.1.3 65656 d.81.1.5 65657 1s0yA 76 6.85e+00 1hzpA 335 6.88e+00 1hn9A c.95.1.1 61455 c.95.1.1 61456 1ijgA 309 6.94e+00 1fouA e.27.1.1 62493 1ebfA 358 7.07e+00 1ebuA c.2.1.3 30033 d.81.1.2 39948 1iro 54 7.24e+00 1rb9 g.41.5.1 45223 1qczA 169 7.24e+00 1qczA c.23.8.1 31276 1fecA 490 7.42e+00 3grs c.3.1.5 30489 c.3.1.5 30490 d.87.1.1 40176 1div 149 7.55e+00 1div d.99.1.1 40692 d.100.1.1 40693 1lmb3 92 8.02e+00 1lmb3 1rdg 53 8.06e+00 1rb9 g.41.5.1 45221 1cqxA 403 8.34e+00 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1hn4A 131 8.49e+00 a.133.1.2 65893 1o22A 170 8.58e+00 d.238.1.1 86557 1p5sA 203 8.68e+00 1v9dA 340 8.70e+00 1t8hA 277 8.77e+00 1e55A 512 8.92e+00 1e70M c.1.8.4 28934 1fm2A 169 8.99e+00 1fm2A d.153.1.2 59877 3cla 213 9.26e+00 3cla c.43.1.1 32610 1h49A 512 9.30e+00 c.1.8.4 83477 1m6sA 347 9.33e+00 c.67.1.1 78701 1fiqB 350 9.48e+00 1fiqB d.87.2.1 40229 d.145.1.3 41760 1h2rL 534 9.49e+00 1h2rL e.18.1.1 43298 1p2xA 159 9.54e+00 1ubkL 534 9.55e+00 e.18.1.1 88422 1go3F 107 9.84e+00 a.60.8.2 65407 1d1gA 168 9.93e+00 1d1gA c.71.1.1 34889 1j7lA 264 1.02e+01 d.144.1.6 62697 1eluA 390 1.04e+01 1elqA c.67.1.3 34434 1elqA 390 1.04e+01 1elqA c.67.1.3 34436 1ow4A 129 1.04e+01 1h8eD 482 1.06e+01 1skyE a.69.1.1 60747 b.49.1.1 60748 c.37.1.11 60749 1jg8A 347 1.06e+01 1jg8A c.67.1.1 62946 1mwwA 128 1.08e+01 6ldh 330 1.08e+01 3ldh c.2.1.5 30161 d.162.1.1 42128 1hfoA 113 1.11e+01 d.80.1.3 61006 4icb 76 1.11e+01 4icb a.39.1.1 17145 1guzA 310 1.12e+01 c.2.1.5 65586 d.162.1.1 65587 1lucA 355 1.12e+01 1lucA c.1.16.1 29547 1pujA 282 1.14e+01 c.37.1.8 88294 1v32A 101 1.16e+01 1jv2B 692 1.16e+01 b.1.15.1 67338 c.62.1.1 67339 d.200.1.1 67340 g.3.11.6 67341 g.3.11.6 67342 1f08A 148 1.20e+01 1f08A d.89.1.2 59564 1ku1A 230 1.20e+01 a.118.3.1 72996 1xyzA 347 1.22e+01 1taxA c.1.8.3 28804 2dhqA 146 1.24e+01 2dhqA c.23.13.1 31382 1dbxA 158 1.26e+01 1dbuA d.116.1.1 40928 1brfA 53 1.28e+01 1rb9 g.41.5.1 45236 1bq9A 54 1.28e+01 1rb9 g.41.5.1 45238 1e79D 482 1.29e+01 1skyE a.69.1.1 18272 b.49.1.1 26437 c.37.1.11 32317 1j5xA 342 1.30e+01 c.80.1.1 71591 1ogwA 76 1.30e+01 d.15.1.1 87001 1j6oA 268 1.32e+01 c.1.9.12 77088 1ojaA 520 1.32e+01 1ubi 76 1.33e+01 1ubi d.15.1.1 37584 1s3eA 520 1.33e+01 1lssA 140 1.34e+01 c.2.1.9 74246 1pieA 419 1.41e+01 1s0yB 71 1.43e+01 1jmxA 494 1.46e+01 a.3.1.7 66901 a.3.1.7 66902 b.1.18.14 66903 b.1.18.14 66904 b.61.4.1 66905 1alo 907 1.46e+01 1alo 1i24A 404 1.46e+01 c.2.1.2 83663 1reqA 727 1.47e+01 1reqA c.1.19.1 29620 c.23.6.1 31247 1ig5A 75 1.48e+01 4icb a.39.1.1 62363 1mnnA 340 1.48e+01 b.2.5.7 79324 1dd3C 32 1.48e+01 1dd3C a.108.1.1 19033 1a41 234 1.50e+01 1a41 d.163.1.2 42174 5reqA 727 1.53e+01 1reqA c.1.19.1 29632 c.23.6.1 31259 1d0qA 103 1.55e+01 1d0qA g.41.3.2 45208 1qr0A 228 1.56e+01 1qr0A d.150.1.1 59038 d.150.1.1 59039 1g99A 408 1.57e+01 1g99A c.55.1.2 33457 c.55.1.2 33458 1g8mA 593 1.59e+01 1g8mA c.24.1.3 60371 c.97.2.1 60372 1fo4A 1332 1.62e+01 a.56.1.1 17910 d.15.4.2 37695 d.41.1.1 38586 d.87.2.1 40227 d.133.1.1 41416 d.145.1.3 41758 1bl0A 129 1.62e+01 1d5yA a.4.1.8 16053 a.4.1.8 16054 1gpl 432 1.62e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1hrdA 449 1.64e+01 1k89 c.2.1.7 30219 c.58.1.1 33867 1na6A 404 1.65e+01 1oz9A 150 1.65e+01 1cx4A 305 1.66e+01 b.82.3.2 59099 b.82.3.2 59100 1bgvA 449 1.68e+01 1k89 c.2.1.7 30217 c.58.1.1 33865 1t2dA 322 1.70e+01 1su8A 636 1.71e+01 1f2rI 100 1.71e+01 1c9fA d.15.2.1 37641 1v7nV 163 1.71e+01 1p3jA 217 1.73e+01 1hlrA 907 1.77e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1gu2A 124 1.79e+01 a.3.1.1 76348 1q16C 225 1.83e+01 1v5sA 126 1.84e+01 1g291 372 1.88e+01 1g291 1f83A 425 1.89e+01 1f82A d.92.1.7 40306 1gpuA 680 1.94e+01 c.36.1.6 65455 c.36.1.10 65454 c.48.1.1 65456 1nu5A 370 1.94e+01 1pzgA 331 1.96e+01 1sdjA 310 1.98e+01 5eau 548 1.99e+01 5eat a.102.4.1 18851 a.128.1.3 19443 1ldg 316 1.99e+01 1ceqA c.2.1.5 30165 d.162.1.1 42132 1mzjA 339 2.00e+01 c.95.1.1 79700 c.95.1.1 79701 1ddgA 374 2.00e+01 1amoA b.43.4.1 25671 c.25.1.4 31559 1pyaB 228 2.01e+01 1pyaB 1qgdA 662 2.02e+01 c.36.1.6 88367 c.36.1.10 88368 c.48.1.1 88369 1ryoA 327 2.02e+01 1uekA 275 2.03e+01 d.14.1.5 88483 d.58.26.5 88484 1bbhA 131 2.04e+01 1bbhA a.24.3.2 16546 1jjyA 636 2.09e+01 1jjyA e.26.1.2 63141 1h99A 224 2.09e+01 a.142.1.1 60814 a.142.1.1 60815 1gyxA 76 2.21e+01 d.80.1.1 76387 1r6uA 437 2.24e+01 1a8e 329 2.24e+01 1cb6A c.94.1.2 35888 1uehA 253 2.25e+01 1iuhA 198 2.25e+01 d.61.1.2 83711 1atlA 202 2.25e+01 1atlA d.92.1.9 40322 1ev0A 58 2.32e+01 1ev0A d.71.1.1 39594 1qgoA 264 2.32e+01 1qgoA c.92.1.2 35596 1vjrA 271 2.32e+01 1odfA 290 2.33e+01 1jj2M 186 2.35e+01 1ffkK c.55.4.1 63098 1gnlA 544 2.40e+01 e.26.1.1 70287 1b0nA 111 2.41e+01 1b0nA a.34.1.1 17001 a.35.1.3 17064 1j3mA 129 2.44e+01 1mldA 314 2.45e+01 2cmd c.2.1.5 30122 d.162.1.1 42089 1fxoA 293 2.47e+01 1g0rA c.68.1.6 34524 1t5jA 313 2.47e+01 1abrA 251 2.51e+01 1mrj d.165.1.1 42196 1i0dA 332 2.51e+01 1pscA c.1.9.3 61487 1hzyA 332 2.52e+01 1pscA c.1.9.3 61468 1d2zB 153 2.53e+01 1d2zB a.77.1.2 18439 1e0eA 55 2.54e+01 1wjcA a.4.10.1 59147 6paxA 133 2.56e+01 6paxA a.4.1.5 64758 a.4.1.5 64759 1stfI 98 2.58e+01 1stfI d.17.1.2 38006 1iv3A 152 2.58e+01 d.79.5.1 76828 1b4fA 82 2.59e+01 1b4fA a.60.1.2 17934 1mlwA 301 2.59e+01 d.178.1.1 79289 1gqpA 221 2.63e+01 b.18.1.9 70372 1a6jA 163 2.64e+01 1a6jA d.112.1.1 40915 1bkrA 109 2.65e+01 1bkrA a.40.1.1 17394 1oxjA 173 2.66e+01 a.60.1.2 87517 a.118.1.13 87518 1rkxA 357 2.69e+01 1e5pA 151 2.69e+01 1bj7 b.60.1.1 59272 1aly 146 2.70e+01 1aly b.22.1.1 23856 1o08A 221 2.71e+01 c.108.1.6 86525 1i1iP 681 2.72e+01 1i1iP d.92.1.5 40297 1iomA 377 2.74e+01 a.103.1.1 83698 1jhfA 202 2.75e+01 a.4.5.2 63057 b.87.1.1 63058 1l9vA 317 2.77e+01 d.13.2.1 73760 d.216.1.1 73761 1mswD 883 2.78e+01 e.8.1.3 79427 1jqnA 883 2.80e+01 c.1.12.3 77159 1a0p 290 2.85e+01 1a0p a.60.9.1 18105 d.163.1.1 42165 1dszA 86 2.87e+01 2nllB g.39.1.2 45129 1nykA 165 2.93e+01 b.33.1.1 86408 1euhA 475 2.98e+01 1euhA c.82.1.1 35369 1fiy 883 3.00e+01 1fiy c.1.12.3 29307 1rw2A 152 3.05e+01 2reb 352 3.08e+01 2reb c.37.1.11 32282 d.48.1.1 38767 1t7pA 698 3.13e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1ga6A 372 3.15e+01 1ga1A c.41.1.2 32556 1ct5A 256 3.16e+01 1ct5A c.1.6.2 28663 1o5uA 101 3.19e+01 1q8iA 783 3.20e+01 1bo1A 416 3.23e+01 1bo1A d.143.1.2 41591 1cex 214 3.29e+01 1cex c.23.9.1 31285 1orrA 347 3.29e+01 1bg6 359 3.30e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1gu7A 364 3.31e+01 b.35.1.2 83321 c.2.1.1 83322 1f2dA 341 3.33e+01 1f2dA c.79.1.1 35298 1dlwA 116 3.37e+01 1dlyA a.1.1.1 14982 1gntA 553 3.39e+01 e.26.1.1 70290 1s6yA 450 3.43e+01 1o50A 157 3.44e+01 1ois 223 3.45e+01 1a36A e.15.1.1 43267 1nz0A 118 3.49e+01 d.14.1.2 86433 1k4nA 192 3.49e+01 d.32.1.5 72059 1ehkA 562 3.52e+01 1ehkA f.24.1.1 43624 1iwmA 186 3.52e+01 b.125.1.2 83758 1ir6A 424 3.53e+01 c.107.1.2 71342 1dbwA 126 3.53e+01 1dbwA c.23.1.1 31095 1e1hA 287 3.54e+01 d.92.1.7 83167 1khyA 148 3.55e+01 a.174.1.1 77410 1r5qA 102 3.56e+01 5csmA 256 3.57e+01 5csmA a.130.1.2 19494 2vsgA 358 3.65e+01 2vsgA h.4.1.1 45780 1cjwA 166 3.65e+01 1cjwA d.108.1.1 40818 1reoA 486 3.69e+01 1fmjA 351 3.69e+01 c.37.1.5 59879 1guxB 152 3.70e+01 1guxB a.74.1.3 18389 1miwA 404 3.71e+01 a.173.1.1 79162 d.218.1.4 79163 1npyA 271 3.72e+01 c.2.1.7 85995 c.58.1.5 85996 1aqm 453 3.77e+01 1smd b.71.1.1 27717 c.1.8.1 28704 1uf2A 1019 3.78e+01 1azsA 220 3.78e+01 1azsA d.58.29.1 39416 1se9A 126 3.81e+01 1cf2O 337 3.87e+01 1b7gO c.2.1.3 29994 d.81.1.1 39909 1fiqC 763 3.92e+01 1fiqC d.41.1.1 38588 d.133.1.1 41418 1a48 306 3.93e+01 1a48 d.143.1.1 41590 1ng6A 148 3.95e+01 a.182.1.1 85670 1dqeA 137 3.96e+01 1dqeA a.39.2.1 17388 1uj2A 252 3.97e+01 1k8uA 90 3.97e+01 a.39.1.2 72181 1ur1A 378 3.97e+01 1i50J 70 3.99e+01 a.4.11.1 61764