# List of top-scoring protein chains for t04-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l0iA 78 3.16e-09 a.28.1.1 77643 1f80D 81 3.32e-07 1acp a.28.1.1 59686 1gd0A 122 3.06e-01 1dptA d.80.1.3 39834 1jj2W 91 5.60e-01 1ffkU d.29.1.1 63108 1dptA 117 9.81e-01 1dptA d.80.1.3 39862 1pjr 724 9.99e-01 1pjr c.37.1.19 32391 c.37.1.19 32392 1nz0A 118 1.39e+00 d.14.1.2 86433 1j0aA 325 1.42e+00 c.79.1.1 83871 1vom 762 1.67e+00 1lvk b.34.3.1 24577 c.37.1.9 32174 1orrA 347 1.98e+00 3pcgM 238 2.20e+00 3pchM b.3.6.1 22742 1fo1A 271 2.33e+00 1fo1A c.10.2.3 30869 d.58.7.2 39213 1qo2A 241 2.46e+00 1qo2A c.1.2.1 28533 1eg5A 384 2.64e+00 1ecxA c.67.1.3 34429 1ay7B 89 3.17e+00 1ay7B c.9.1.1 30836 1cby 259 3.69e+00 1cby d.103.1.1 40705 1ccwA 137 3.73e+00 1be1 c.23.6.1 31238 1go3F 107 5.30e+00 a.60.8.2 65407 1qlaB 239 6.41e+00 1qlaB a.1.2.1 15679 d.15.4.2 37707 1lm8B 118 6.96e+00 d.15.1.1 74033 1vcbA 118 7.12e+00 1vcbA d.15.1.1 37603 1ka2A 499 7.55e+00 d.92.1.5 77305 1d7uA 433 7.72e+00 2dkb c.67.1.4 34439 1div 149 8.06e+00 1div d.99.1.1 40692 d.100.1.1 40693 1v9jA 113 8.37e+00 1hfoA 113 1.08e+01 d.80.1.3 61006 1jykA 254 1.11e+01 c.68.1.13 67458 1fiqB 350 1.11e+01 1fiqB d.87.2.1 40229 d.145.1.3 41760 1ib8A 164 1.12e+01 b.38.2.1 71168 d.52.4.1 71169 1i50J 70 1.16e+01 a.4.11.1 61764 1lylA 504 1.19e+01 1lylA b.40.4.1 25261 d.104.1.1 40717 1o6vA 466 1.22e+01 b.1.18.15 81099 c.10.2.1 81100 1ockA 412 1.28e+01 c.117.1.1 86802 2cb5A 453 1.28e+01 3gcb d.3.1.1 37035 1n5dA 288 1.30e+01 c.2.1.2 80030 1hu4A 288 1.30e+01 1hu4A 1fm0D 81 1.41e+01 1fmaD d.15.3.1 37642 1vh7A 265 1.58e+01 1e7uA 961 1.60e+01 1e8xA a.118.1.6 19147 b.7.1.1 23182 d.15.1.5 37630 d.144.1.4 41710 1egaA 301 1.71e+01 1egaA c.37.1.8 32150 d.52.3.1 38836 1v32A 101 1.71e+01 1mwwA 128 1.75e+01 1jqeA 292 1.83e+01 c.66.1.19 71789 1cjwA 166 1.84e+01 1cjwA d.108.1.1 40818 1e4fT 419 1.86e+01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1thfD 253 1.94e+01 1thfD c.1.2.1 28535 1j3mA 129 1.95e+01 1p0yA 444 1.96e+01 a.166.1.1 87654 b.85.7.3 87655 1lssA 140 2.24e+01 c.2.1.9 74246 1kopA 223 2.28e+01 2cba b.74.1.1 27966 1rw2A 152 2.40e+01 1jflA 228 2.43e+01 c.78.2.1 71656 c.78.2.1 71657 1nnvA 110 2.58e+01 1n3kA 130 2.81e+01 a.77.1.4 79965 1dixA 208 2.82e+01 1bk7A d.124.1.1 41122 1iqqA 200 2.88e+01 d.124.1.1 66274 1ct5A 256 2.89e+01 1ct5A c.1.6.2 28663 1alo 907 2.96e+01 1alo 1h5wA 309 2.98e+01 e.27.1.1 65635 1o4vA 183 2.98e+01 c.23.8.1 86628 1koqA 253 3.00e+01 2cba b.74.1.1 27964 1g8iA 190 3.02e+01 1rec a.39.1.5 60363 1jmtA 104 3.02e+01 d.58.7.3 63180 1s3eA 520 3.15e+01 1fk5A 93 3.16e+01 1rzl a.52.1.1 59866 1r6uA 437 3.18e+01 1e1oA 504 3.26e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1ngr 85 3.35e+01 1ngr a.77.1.2 18422 1azo 232 3.38e+01 1azo c.52.1.14 33329 1hlrA 907 3.50e+01 a.56.1.1 65850 d.15.4.2 65851 d.41.1.1 65852 d.133.1.1 65853 1b4fA 82 3.56e+01 1b4fA a.60.1.2 17934 1ir3A 306 3.57e+01 1fmk d.144.1.7 41702 1icrA 217 3.60e+01 1vfrA d.90.1.1 62274 1kinA 366 3.73e+01 1ijgA 309 3.83e+01 1fouA e.27.1.1 62493 1mkp 144 3.86e+01 1vhrA c.45.1.1 32654 1p5sA 203 3.96e+01 1cqxA 403 3.99e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562