PFRMAT RR TARGET T0221 AUTHOR 4204-4258-2837 REMARK From group SAM-TO4-hand under the direction of REMARK Kevin Karplus. REMARK Project by George Shackelford and Kevin Karplus REMARK The value given is an approximation of the probability REMARK as provided by the neural network. REMARK The predictions are limited to a score >= .18 which REMARK is an approximation of the probability. REMARK METHOD The predictor is an artificial neural network METHOD using 280 inputs. METHOD Input includes separation and sequence length, corrected METHOD mutual information between columns (M. Cline) and METHOD an e-value measure of correlation between columns (K Karplus) METHOD NN: NN280-240n300.net.28 METHOD Other inputs are from alignments and METHOD secondary predictions from SAM-t2k and SAM-t04 of METHOD University of California, Santa Cruz MODEL 1 MKTIQPCSVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALIL LGRLEKWLGKELNPVLIFNYPTIAQLAKRLGELYL 21 42 0 8 0.68765 16 54 0 8 0.61795 20 43 0 8 0.5814 20 42 0 8 0.56185 26 42 0 8 0.5593 13 38 0 8 0.5525 44 62 0 8 0.5406 47 64 0 8 0.5117 45 64 0 8 0.5117 24 77 0 8 0.50915 38 69 0 8 0.4845 13 42 0 8 0.48195 42 73 0 8 0.4794 51 84 0 8 0.47685 58 73 0 8 0.4539 34 74 0 8 0.44115 26 73 0 8 0.43435 44 58 0 8 0.4318 12 33 0 8 0.4318 12 73 0 8 0.4267 70 79 0 8 0.4233 20 40 0 8 0.41565 8 38 0 8 0.41565 16 51 0 8 0.40885 45 63 0 8 0.39865 48 65 0 8 0.391 17 40 0 8 0.391 12 42 0 8 0.3859 16 53 0 8 0.3808 19 53 0 8 0.3757 16 42 0 8 0.3757 19 42 0 8 0.3706 8 42 0 8 0.3706 55 64 0 8 0.36805 20 54 0 8 0.34765 12 58 0 8 0.34765 24 62 0 8 0.34595 31 42 0 8 0.34085 16 58 0 8 0.34085 40 64 0 8 0.3383 19 54 0 8 0.33065 20 67 0 8 0.3281 16 64 0 8 0.3281 67 84 0 8 0.3264 50 76 0 8 0.3264 54 73 0 8 0.32385 21 59 0 8 0.3213 22 58 0 8 0.31875 42 58 0 8 0.3162 20 58 0 8 0.3162 16 77 0 8 0.3162 23 64 0 8 0.3145 21 58 0 8 0.3145 17 53 0 8 0.3145 20 73 0 8 0.31195 57 73 0 8 0.3094 51 64 0 8 0.30685 19 50 0 8 0.30685 8 37 0 8 0.3043 38 55 0 8 0.2975 20 50 0 8 0.2975 50 73 0 8 0.28815 45 62 0 8 0.28815 42 55 0 8 0.28135 54 64 0 8 0.2771 45 58 0 8 0.2771 37 68 0 8 0.2771 16 73 0 8 0.2771 15 58 0 8 0.2771 62 80 0 8 0.27455 47 68 0 8 0.27285 26 46 0 8 0.27285 19 51 0 8 0.2703 47 77 0 8 0.2686 33 73 0 8 0.2686 31 80 0 8 0.2686 26 62 0 8 0.2686 15 57 0 8 0.26605 15 73 0 8 0.2618 15 51 0 8 0.25925 13 73 0 8 0.25925 31 76 0 8 0.25755 46 64 0 8 0.255 20 64 0 8 0.2533 42 64 0 8 0.25075 20 31 0 8 0.24905 15 42 0 8 0.2465 31 77 0 8 0.2448 67 80 0 8 0.24225 20 80 0 8 0.24225 52 84 0 8 0.24055 15 77 0 8 0.24055 20 66 0 8 0.238 12 77 0 8 0.238 47 66 0 8 0.2363 17 51 0 8 0.2363 17 42 0 8 0.2363 16 67 0 8 0.2363 15 53 0 8 0.2346 33 42 0 8 0.23035 26 58 0 8 0.23035 66 80 0 8 0.2278 21 31 0 8 0.2278 51 73 0 8 0.2261 19 58 0 8 0.2244 13 46 0 8 0.2244 12 64 0 8 0.2244 47 73 0 8 0.22015 21 33 0 8 0.22015 17 26 0 8 0.22015 7 42 0 8 0.21845 23 57 0 8 0.21675 15 49 0 8 0.21675 36 48 0 8 0.2142 35 49 0 8 0.2142 42 54 0 8 0.2125 36 69 0 8 0.2125 16 40 0 8 0.2125 16 26 0 8 0.2125 26 36 0 8 0.2108 16 68 0 8 0.2108 15 36 0 8 0.2108 47 67 0 8 0.2091 46 84 0 8 0.2091 25 63 0 8 0.2091 46 58 0 8 0.20655 37 47 0 8 0.20655 58 76 0 8 0.20485 51 80 0 8 0.20145 40 66 0 8 0.20145 26 54 0 8 0.1972 69 79 0 8 0.1955 42 62 0 8 0.1955 45 57 0 8 0.1938 24 37 0 8 0.1938 20 33 0 8 0.1938 58 67 0 8 0.1921 36 49 0 8 0.1921 13 59 0 8 0.1921 37 73 0 8 0.1904 26 64 0 8 0.1887 23 42 0 8 0.1887 15 55 0 8 0.1887 13 69 0 8 0.1887 19 73 0 8 0.187 8 40 0 8 0.187 8 46 0 8 0.1853 42 84 0 8 0.1836 13 37 0 8 0.1836 4 33 0 8 0.1836 36 58 0 8 0.1819 36 46 0 8 0.1819 8 31 0 8 0.1819 68 79 0 8 0.1802 54 68 0 8 0.1802 53 68 0 8 0.1802 20 76 0 8 0.1802 20 37 0 8 0.1802 13 58 0 8 0.1802 END