PFRMAT RR
TARGET T0220
AUTHOR 4204-4258-2837
REMARK From group SAM-TO4-hand under the direction of
REMARK Kevin Karplus.
REMARK Project by George Shackelford and Kevin Karplus
REMARK The value given is an approximate of the probability
REMARK as provided by the neural network.
REMARK The number of predictions is limited to .5*sequence_length.
REMARK
METHOD The predictor is an artifical neural network
METHOD using 134 inputs.
METHOD Input includes separation and sequence length, corrected
METHOD mutual information between columns (M. Cline) and 
METHOD an e-value measure of correlation between columns (K Karplus) 
METHOD Other inputs are from alignments and
METHOD secondary predictions from SAM-t2k and SAM-t04 of 
METHOD University of California, Santa Cruz
METHOD This version uses a new error function designed to improve
METHOD the top scores per protein.
MODEL 1
METLILTQEEVESLISMDEAMNAVEEAFRLYALGKAQMPPKVYLEFEKGD
LRAMPAHLMGYAGLKWVNSHPGNPDKGLPTVMALMILNSPETGFPLAVMD
ATYTTSLRTGAAGGIAAKYLARKNSSVFGFIGCGTQAYFQLEALRRVFDI
GEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKP
VVKAEWVEEGTHINAIGADGPGKQELDVEILKKAKIVVDDLEQAKHGGEI
NVAVSKGVIGVEDVHATIGEVIAGLKDGRESDEEITIFDSTGLAIQDVAV
AKVVYENALSKNVGSKIKFFRI
219 243 0 8 0.451
140 214 0 8 0.445
215 225 0 8 0.436
143 217 0 8 0.427
194 217 0 8 0.421
225 249 0 8 0.412
121 143 0 8 0.412
56 140 0 8 0.409
41 54 0 8 0.404
108 140 0 8 0.401
80 105 0 8 0.401
136 217 0 8 0.398
54 67 0 8 0.398
105 136 0 8 0.392
87 108 0 8 0.392
83 105 0 8 0.392
218 242 0 8 0.389
200 218 0 8 0.389
109 212 0 8 0.389
109 121 0 8 0.386
105 216 0 8 0.386
105 225 0 8 0.384
83 108 0 8 0.381
109 230 0 8 0.378
39 54 0 8 0.375
136 200 0 8 0.372
109 136 0 8 0.372
87 109 0 8 0.372
54 136 0 8 0.372
140 223 0 8 0.37
140 215 0 8 0.364
54 214 0 8 0.364
54 109 0 8 0.364
39 57 0 8 0.364
136 215 0 8 0.361
133 157 0 8 0.361
137 217 0 8 0.358
136 214 0 8 0.358
218 238 0 8 0.356
108 136 0 8 0.356
87 215 0 8 0.356
39 222 0 8 0.356
39 56 0 8 0.356
193 238 0 8 0.353
140 230 0 8 0.353
54 97 0 8 0.353
193 215 0 8 0.35
148 248 0 8 0.35
109 244 0 8 0.35
56 109 0 8 0.345
108 269 0 8 0.342
105 140 0 8 0.342
193 217 0 8 0.339
108 212 0 8 0.339
54 108 0 8 0.339
41 140 0 8 0.339
137 214 0 8 0.337
120 211 0 8 0.337
140 212 0 8 0.334
129 215 0 8 0.334
108 191 0 8 0.334
227 248 0 8 0.331
66 88 0 8 0.331
56 217 0 8 0.331
56 136 0 8 0.331
223 243 0 8 0.329
144 192 0 8 0.329
97 108 0 8 0.326
223 248 0 8 0.323
215 244 0 8 0.323
129 139 0 8 0.323
108 268 0 8 0.323
104 140 0 8 0.323
39 60 0 8 0.323
136 150 0 8 0.321
89 268 0 8 0.321
89 136 0 8 0.321
87 122 0 8 0.321
39 49 0 8 0.321
73 92 0 8 0.318
219 248 0 8 0.316
121 268 0 8 0.316
115 194 0 8 0.316
101 269 0 8 0.316
56 268 0 8 0.316
218 243 0 8 0.313
200 239 0 8 0.313
140 272 0 8 0.313
139 193 0 8 0.313
120 213 0 8 0.313
215 238 0 8 0.31
129 140 0 8 0.31
109 268 0 8 0.31
87 140 0 8 0.31
54 86 0 8 0.31
227 238 0 8 0.308
136 269 0 8 0.308
120 212 0 8 0.308
108 248 0 8 0.308
89 108 0 8 0.308
140 243 0 8 0.305
129 188 0 8 0.305
55 67 0 8 0.305
39 82 0 8 0.305
129 157 0 8 0.303
125 150 0 8 0.303
121 212 0 8 0.303
87 143 0 8 0.303
212 286 0 8 0.3
143 248 0 8 0.3
140 216 0 8 0.3
137 239 0 8 0.3
136 268 0 8 0.3
67 222 0 8 0.3
212 269 0 8 0.298
129 271 0 8 0.298
113 140 0 8 0.298
105 215 0 8 0.298
56 200 0 8 0.298
54 222 0 8 0.298
218 227 0 8 0.295
110 237 0 8 0.295
108 217 0 8 0.295
105 248 0 8 0.295
105 214 0 8 0.295
136 213 0 8 0.293
129 156 0 8 0.293
111 268 0 8 0.293
108 137 0 8 0.293
28 39 0 8 0.293
226 245 0 8 0.29
85 140 0 8 0.29
143 212 0 8 0.288
129 184 0 8 0.288
117 212 0 8 0.288
111 200 0 8 0.285
105 212 0 8 0.285
101 136 0 8 0.285
52 219 0 8 0.285
41 217 0 8 0.285
41 67 0 8 0.285
212 225 0 8 0.283
201 225 0 8 0.283
200 238 0 8 0.283
192 214 0 8 0.283
140 217 0 8 0.283
122 268 0 8 0.283
109 200 0 8 0.283
86 214 0 8 0.283
84 140 0 8 0.283
54 140 0 8 0.283
43 82 0 8 0.283
125 148 0 8 0.28
121 274 0 8 0.28
120 136 0 8 0.28
3 39 0 8 0.28
143 227 0 8 0.278
136 212 0 8 0.278
109 271 0 8 0.278
108 271 0 8 0.278
54 216 0 8 0.278
END