# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mzeA 351 7.90e-22 b.82.2.6 79694 1h2kA 349 8.81e-22 b.82.2.6 76572 1fi2A 201 1.42e-03 1fi2A b.82.1.2 59845 2arcA 164 1.70e-03 2arcA b.82.4.1 28148 1plzA 189 1.84e-03 b.82.1.7 88160 2arcB 164 1.90e-03 2arcA b.82.4.1 28149 1j58A 385 1.98e-03 b.82.1.2 71531 1qxrA 189 2.07e-03 2aacA 177 2.20e-03 2arcA b.82.4.1 28150 1cawB 184 2.85e-03 1caxB b.82.1.2 28113 1cauB 184 1.12e-02 1caxB b.82.1.2 28103 2cavA 445 1.37e-02 1dgwA b.82.1.2 28094 b.82.1.2 28095 1caxB 184 1.99e-02 1caxB b.82.1.2 28105 1od5A 492 2.71e-02 b.82.1.2 86832 b.82.1.2 86833 1lr5A 163 6.02e-02 b.82.1.2 74215 1fnmA 691 1.03e-01 1dar b.43.3.1 25709 c.37.1.8 32144 d.14.1.1 37546 d.58.11.1 39302 d.58.11.1 39303 1nxmA 197 1.62e-01 b.82.1.1 86385 1qwrA 319 1.77e-01 1fxzA 476 2.01e-01 b.82.1.2 65059 b.82.1.2 65060 1ofnA 205 4.07e-01 1oi6A 205 4.59e-01 1dar 691 4.82e-01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1e5rA 290 9.31e-01 1e5rA b.82.2.4 59276 1pbuA 162 9.75e-01 d.58.46.1 88030 1mrzA 293 1.11e+00 1o4tA 133 1.29e+00 b.82.1.9 86622 2phlA 397 1.64e+00 1dgwA b.82.1.2 28082 b.82.1.2 28083 1nnt 328 1.82e+00 1nnt c.94.1.2 35884 1q15A 503 2.09e+00 1iejA 332 2.44e+00 1nnt c.94.1.2 62328 1rl2A 137 2.47e+00 1rl2A b.34.5.3 24610 b.40.4.5 25342 1tfaA 329 2.53e+00 1nnt c.94.1.2 35880 1dgrC 178 2.73e+00 1dgwA b.82.1.2 28100 1nftA 329 2.88e+00 1nnt c.94.1.2 35881 1dgrW 93 2.99e+00 1caxB 1dgrM 93 3.25e+00 1caxB b.82.1.2 28101 1dgwA 178 3.52e+00 1dgwA b.82.1.2 28090 1dctA 324 3.59e+00 6mhtA c.66.1.26 34244 1cauA 181 3.79e+00 1dgwA b.82.1.2 28102 1hqsA 423 4.06e+00 1iso c.77.1.1 61154 4ts1A 319 4.25e+00 2ts1 c.26.1.1 31565 1n62C 288 4.51e+00 d.87.2.1 80094 d.145.1.3 80095 1dgwY 93 4.81e+00 1caxB 1ft9A 222 4.91e+00 1ft9A a.4.5.4 16107 b.82.3.1 28131 1vddA 228 6.36e+00 3hmgA 328 6.74e+00 1hgeA b.19.1.2 23825 1g55A 343 7.64e+00 1g55A c.66.1.26 34247 1qj2C 285 7.81e+00 1qj2C 1rm8A 169 7.93e+00 1az9 457 8.14e+00 1az9 c.55.2.1 33547 d.127.1.1 41164 1a16 440 8.20e+00 1az9 c.55.2.1 33548 d.127.1.1 41165 2viuA 328 8.65e+00 1hgeA b.19.1.2 23797 1hgeA 328 8.71e+00 1hgeA b.19.1.2 23816 1h1iD 350 9.23e+00 b.82.1.5 76472 1elt 236 9.59e+00 5ptp b.47.1.2 26281 1h1iC 350 9.67e+00 b.82.1.5 76471 1h1iB 350 9.76e+00 b.82.1.5 76470 1juhA 350 1.09e+01 b.82.1.5 71884 2ts1 419 1.18e+01 2ts1 c.26.1.1 31564 1umdB 324 1.43e+01 1hfx 123 1.44e+01 3lzt d.2.1.2 36600 1dupA 152 1.55e+01 1dupA b.85.4.1 28351 1euwA 152 1.55e+01 1dupA b.85.4.1 28349 1gskA 513 1.55e+01 b.6.1.3 83314 b.6.1.3 83315 b.6.1.3 83316 1n82A 331 1.61e+01 1ebfA 358 1.66e+01 1ebuA c.2.1.3 30033 d.81.1.2 39948 1oaoA 674 1.72e+01 e.26.1.2 86744 2rslA 140 1.85e+01 2rslA c.53.1.1 33345 1ep0A 185 1.89e+01 1dzrA b.82.1.1 28080 1btu 240 1.95e+01 5ptp b.47.1.2 26241 1gvkB 240 1.95e+01 b.47.1.2 70610 1jtkA 136 2.00e+01 c.97.1.1 71862 1khbA 625 2.01e+01 c.91.1.1 68606 c.109.1.1 68607 1nzjA 298 2.02e+01 1qnjA 240 2.10e+01 5ptp b.47.1.2 26238 1shwA 138 2.14e+01 1uf2A 1019 2.37e+01 1ji8A 111 2.42e+01 d.203.1.1 66733 1i9bA 217 2.53e+01 1i9bA b.96.1.1 62084 16pk 415 2.55e+01 16pk c.86.1.1 35454 1in6A 334 2.58e+01 1hqcA a.4.5.11 62601 c.37.1.20 62602 1kc6A 257 2.65e+01 c.52.1.19 68419 1umsA 174 2.66e+01 1hfc d.92.1.11 40368 1uw6A 211 2.78e+01 1ns5A 155 2.82e+01 c.116.1.3 80705 1hf2A 210 2.88e+01 1hf2A b.80.3.1 60992 c.102.1.1 60993 1qo7A 394 2.92e+01 1qo7A c.69.1.11 34697 1uumA 372 2.92e+01 1bqk 124 2.93e+01 1bqk b.6.1.1 22889 1hx0A 496 2.96e+01 b.71.1.1 61346 c.1.8.1 61347 1ifqA 138 3.00e+01 1ifqA d.110.4.1 62350 1uwzA 136 3.00e+01 1qg0A 308 3.01e+01 1fnc b.43.4.2 25639 c.25.1.1 31529 1fnb 314 3.01e+01 1fnc b.43.4.2 25628 c.25.1.1 31518 1dfoA 417 3.13e+01 1bj4A c.67.1.4 34480 1fnd 314 3.13e+01 1fnc b.43.4.2 25626 c.25.1.1 31516 1aqm 453 3.14e+01 1smd b.71.1.1 27717 c.1.8.1 28704 1id2A 106 3.16e+01 1aac b.6.1.1 62288 1vhoA 346 3.22e+01 1mkyA 439 3.23e+01 c.37.1.8 79250 c.37.1.8 79251 d.52.5.1 79252 1smd 496 3.24e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1fnc 314 3.31e+01 1fnc b.43.4.2 25627 c.25.1.1 31517 1ewnA 219 3.33e+01 1bnkA b.46.1.2 25762 1ntcA 91 3.39e+01 1ntcA a.105.1.1 19004 1jhdA 396 3.41e+01 b.122.1.3 66712 c.26.1.5 66713 1g59A 468 3.48e+01 a.97.1.1 60257 c.26.1.1 60258 1dzrA 183 3.49e+01 1dzrA b.82.1.1 28076 1b0jA 754 3.54e+01 1amj c.8.2.1 30719 c.83.1.1 35395 1te5A 257 3.67e+01 1ds1A 324 3.70e+01 1drtA b.82.2.2 28127 1k82A 268 3.74e+01 a.156.1.2 75866 b.113.1.1 75867 g.39.1.8 75868 1pmy 123 3.74e+01 1bqk b.6.1.1 22888 1hl9A 449 3.95e+01 1ixmB 192 3.96e+01 1ixmA d.123.1.1 41115