# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h2kA 349 2.72e-20 b.82.2.6 76572 1mzeA 351 2.77e-20 b.82.2.6 79694 1j58A 385 1.16e-03 b.82.1.2 71531 2phlA 397 1.24e-02 1dgwA b.82.1.2 28082 b.82.1.2 28083 2aacA 177 2.63e-02 2arcA b.82.4.1 28150 2arcB 164 2.93e-02 2arcA b.82.4.1 28149 2arcA 164 4.72e-02 2arcA b.82.4.1 28148 2cavA 445 5.38e-02 1dgwA b.82.1.2 28094 b.82.1.2 28095 1qwrA 319 9.49e-02 1mrzA 293 3.61e-01 1caxB 184 7.98e-01 1caxB b.82.1.2 28105 1cauB 184 1.02e+00 1caxB b.82.1.2 28103 1fi2A 201 1.21e+00 1fi2A b.82.1.2 59845 1qxrA 189 1.25e+00 1cawB 184 1.39e+00 1caxB b.82.1.2 28113 1plzA 189 1.60e+00 b.82.1.7 88160 1lr5A 163 3.49e+00 b.82.1.2 74215 1fxzA 476 3.62e+00 b.82.1.2 65059 b.82.1.2 65060 1od5A 492 4.32e+00 b.82.1.2 86832 b.82.1.2 86833 1l5xA 280 5.39e+00 c.106.1.1 77718 1di1A 300 5.70e+00 1di1A a.128.1.4 19446 1ns5A 155 6.67e+00 c.116.1.3 80705 1pbuA 162 7.32e+00 d.58.46.1 88030 1rm8A 169 7.84e+00 1uu1A 335 7.86e+00 1bxlA 181 8.03e+00 1maz f.1.4.1 43396 1d02A 202 8.26e+00 1d02A c.52.1.8 33313 1innA 166 8.37e+00 1j98A d.185.1.2 62608 1vjeA 166 8.68e+00 1e5rA 290 8.89e+00 1e5rA b.82.2.4 59276 1cll 148 9.35e+00 1cll a.39.1.5 17263 1dgrC 178 1.03e+01 1dgwA b.82.1.2 28100 1iejA 332 1.14e+01 1nnt c.94.1.2 62328 1cauA 181 1.25e+01 1dgwA b.82.1.2 28102 1ifqA 138 1.32e+01 1ifqA d.110.4.1 62350 1dgwA 178 1.36e+01 1dgwA b.82.1.2 28090 1lv7A 257 1.39e+01 c.37.1.20 78232 1ufoA 238 1.40e+01 1nnt 328 1.44e+01 1nnt c.94.1.2 35884 1q3eA 207 1.49e+01 1kc6A 257 1.50e+01 c.52.1.19 68419 1g4yR 148 1.88e+01 1cll a.39.1.5 60252 1uxc 65 2.10e+01 1uxc a.35.1.5 17119 3cln 148 2.10e+01 1cll a.39.1.5 17286 1ytc 112 2.21e+01 1ycc a.3.1.1 15835 1dguA 183 2.25e+01 1dguA a.39.1.5 17333 1o6dA 163 2.33e+01 1ax0 239 2.47e+01 1led b.29.1.1 24042 1q87A 221 2.49e+01 1ezvE 185 2.52e+01 1rie b.33.1.1 59548 f.23.12.1 59549 1pvc2 271 2.56e+01 1aym2 1nnlA 225 2.56e+01 c.108.1.4 85906 1nijA 318 2.62e+01 c.37.1.10 85741 d.237.1.1 85742 1lj2A 110 2.66e+01 h.1.13.2 73926 1f2rI 100 2.74e+01 1c9fA d.15.2.1 37641 1ds1A 324 2.99e+01 1drtA b.82.2.2 28127 1pzxA 289 3.06e+01 1tfaA 329 3.09e+01 1nnt c.94.1.2 35880 2rslA 140 3.11e+01 2rslA c.53.1.1 33345 1shwA 138 3.43e+01 1a0oD 134 3.47e+01 1eayC d.58.24.1 39391 1du3A 130 3.71e+01 1d4vA g.24.1.1 44927 g.24.1.1 44928 g.24.1.1 44929 1gzcA 239 3.71e+01 b.29.1.1 70803 1sxl 97 3.79e+01 1b7fA d.58.7.1 39180 1avgI 142 3.98e+01 1avgI b.60.1.3 27229